PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007460

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Nin-like

Protein Properties

Length: 569aa MW: 64650.9 Da PI: 6.1666

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58688718	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-6535	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.4e-29	298	348	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +isl+dl++yF +++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Lsa007460 298 ERNISLQDLQQYFPGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 348 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.541	287	368	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-26	300	348	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.45E-23	475	560	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.0E-22	477	561	No hit	No description
SMART	SM00666	2.6E-24	479	562	IPR000270	PB1 domain
PROSITE profile	PS51745	20.954	479	562	IPR000270	PB1 domain
Pfam	PF00564	8.3E-18	480	561	IPR000270	PB1 domain
CDD	cd06407	3.05E-36	480	560	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
QAVDLRSSEF LIHPKQKDFS EPYDAVLSEI QDVLRSTCNT LNLPLAQTWG RCEGRSGPIS 60 VIESASYVYD PEILGFFEAA SSQQLVSGEG IAGKALGTNQ PCFTDINDFC RPDYPISSYY 120 GLNAAMAIRL RSTYTGPTDF ILEFFLPRDC KRDDEQKQIG TSIITMIKQI SWSLHLINAE 180 ELMKGMNTRD ESWISDMVEA RERGETVILS MGCQKEEPQE ETNTRDESWI ADMIQARERG 240 EKVILSMGCH KEEPEEEFQV INQFYNGLEN QSFLEWGTGT GLRGQSKRSS IKNRVKTERN 300 ISLQDLQQYF PGSLKDAAKS IGVCPTTLKR ICRQHGIMRW PSRKIKKVSH SLKKLQLVID 360 SVQGAEGMIK LGSFYTNFPE LNSPISPTPK TKVNNRVNHL KKSQTPSNSS SSCSRDSSSS 420 SGNAFPVHTE NVPGSQKRKL PVNQNYNNMN DLLSTPKDKL VDDQRFVEVI PPTQNDEGIF 480 RVKATYGDEK IRFRMSKNWG FGDLHREISK RFNIYDMGNI RIEYIDDDSE WVLLACDDDV 540 EECMDLHTSI NNQTIKLVVH RSTHPSFMW

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

QAVDLRSSEF LIHPKQKDFS EPYDAVLSEI QDVLRSTCNT LNLPLAQTWG RCEGRSGPIS  60
VIESASYVYD PEILGFFEAA SSQQLVSGEG IAGKALGTNQ PCFTDINDFC RPDYPISSYY  120
GLNAAMAIRL RSTYTGPTDF ILEFFLPRDC KRDDEQKQIG TSIITMIKQI SWSLHLINAE  180
ELMKGMNTRD ESWISDMVEA RERGETVILS MGCQKEEPQE ETNTRDESWI ADMIQARERG  240
EKVILSMGCH KEEPEEEFQV INQFYNGLEN QSFLEWGTGT GLRGQSKRSS IKNRVKTERN  300
ISLQDLQQYF PGSLKDAAKS IGVCPTTLKR ICRQHGIMRW PSRKIKKVSH SLKKLQLVID  360
SVQGAEGMIK LGSFYTNFPE LNSPISPTPK TKVNNRVNHL KKSQTPSNSS SSCSRDSSSS  420
SGNAFPVHTE NVPGSQKRKL PVNQNYNNMN DLLSTPKDKL VDDQRFVEVI PPTQNDEGIF  480
RVKATYGDEK IRFRMSKNWG FGDLHREISK RFNIYDMGNI RIEYIDDDSE WVLLACDDDV  540
EECMDLHTSI NNQTIKLVVH RSTHPSFMW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023751290.1	0.0	protein NLP1-like
TrEMBL	A0A2J6M5R1	0.0	A0A2J6M5R1_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	1e-107	Nin-like family protein