PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007447
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 156aa    MW: 18070.1 Da    PI: 6.9578
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58680286PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-19356PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.11.8e-132474555
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55
               ++ +r+q+NRe+ArrsR RK++ ++ L++ + ++++ N +   +++  +++
  Lsa007447 24 RKRKRMQSNRESARRSRIRKQKHVDDLTDQINQIKKDNAQILTTINVTTQQ 74
               5789***********************************999888876666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-161884IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.3E-102275No hitNo description
PROSITE profilePS502179.8752285IPR004827Basic-leucine zipper domain
PfamPF001703.4E-112469IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-122477No hitNo description
CDDcd147021.54E-172575No hitNo description
PROSITE patternPS0003602742IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MASSSGNSSQ IQNSGSDEDL LHQRKRKRMQ SNRESARRSR IRKQKHVDDL TDQINQIKKD  60
NAQILTTINV TTQQFVHVEA DNSVLRAQMG ELSQRLDYLN EIINLMNNNY TNTNCTNGAS  120
TTGLFEFENH DDFMNNPWNL MYLNQQPIMA AEMLRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12344RKRKRMQSNRESARRSRIRKQK
23643RRSRIRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023745439.11e-113bZIP transcription factor 11-like
SwissprotC0Z2L53e-41BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A2J6JQ931e-104A0A2J6JQ93_LACSA; Uncharacterized protein
STRINGPOPTR_0005s25290.11e-51(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.14e-37G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]