PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007392
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HB-PHD
Protein Properties Length: 650aa    MW: 73446.3 Da    PI: 6.5762
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-47739PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.71.2e-10476520953
                HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                +e +e L  +F+kn  ps++ +ee++++lgL+ ++V  WF+N R+
  Lsa007392 476 SEAVEKLRLVFAKNELPSRAVKEEISNQLGLDLEKVNKWFKNARY 520
                678999*************************************97 PP
2PHD29.12.3e-10204257250
                BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
        PHD   2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                C+ C+   +  +++++lCd +C+ +fH+ C++++l +e++p g   w+C+ C +
  Lsa007392 204 CAKCKLreAFPDNDIILCDgTCNCAFHQMCIDPPLLTENIPPGdqGWFCKYCIC 257
                88898844455********56********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.43E-12195260IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.4E-9200259IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.686201258IPR019787Zinc finger, PHD-finger
SMARTSM002491.8E-6203256IPR001965Zinc finger, PHD-type
PfamPF006281.3E-7204257IPR019787Zinc finger, PHD-finger
CDDcd155043.95E-28204255No hitNo description
PROSITE patternPS013590204255IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.0E-12461519IPR009057Homeodomain-like
PROSITE profilePS5007112.293465525IPR001356Homeobox domain
SuperFamilySSF466895.56E-11467530IPR009057Homeodomain-like
SMARTSM003891.7E-10467529IPR001356Homeobox domain
CDDcd000861.45E-9468526No hitNo description
PfamPF000463.8E-8476520IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MTGVETKETR KNIGKLLHSK CSTQKLHTKR SRKPKTPMSK EKLVEFLTNS KRNDFKCRNA  60
SHKTIKSLIN PSITTFQNQE ETAKCENTDL TSEKLKKRRK RKRTKNKVEV DEASRLQGRT  120
RYLLFKMRKE QNLLDAYSTE GWKGQSREKI KPEKELQRAK KQILKCKLGL RDALRQLDLL  180
STDGRIDESV IAPDGSIHHD HIHCAKCKLR EAFPDNDIIL CDGTCNCAFH QMCIDPPLLT  240
ENIPPGDQGW FCKYCICKTD IIDAMNAQLG TSYSNDINWQ EVFKVEATLP DGGETLLNQE  300
DWPSDDSGDD DYDPERVEKH ESSCSNIKLC SEGEGESSDD DGSSNYSFIS LDDEILVDDS  360
RELRIPGIEV NSGDFIPGSG SGSGSDFEPV SGRRQRRAVD YRKLYDEMFG KDALANEQVS  420
EDEDWGPTNR KRREKESDAA STLMTLCETE DKMGKDVAEI SKNDTDSKRS FFRIPSEAVE  480
KLRLVFAKNE LPSRAVKEEI SNQLGLDLEK VNKWFKNARY LSLKRKAEDK PTQNDGPSIS  540
KESANNEILS ENIPTNATKQ HDNGDLLVST STNMVDCDVI GGTQSDNQES TSAEAHMQKL  600
CYLKTKLENL QNILLVRTPN RRAKTTAAQS SSIDHSSTIF VPIAHLKEKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599KKRRK
296102KRRKRKR
397102RRKRKR
498105RKRKRTKN
5429434RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765464.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_023765465.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_023765466.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-153PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2J6LA990.0A0A2J6LA99_LACSA; Uncharacterized protein
STRINGVIT_11s0103g00650.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-152pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]