PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007309

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 419aa MW: 46874.9 Da PI: 6.2868

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58683635	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	284.7	2.6e-87	137	418	1	299
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l+ lL+ecA a+s ++l +a++++ +l ++asp+ + +R++ayf++A+a+r+++s+ ++++ l+ + a+++f+++sP++kf+h+t N Lsa007309 137 LIALLFECAVAISVDNLGEAHRMVLELTQMASPYSpSCGERVVAYFAKAMASRVVNSWLGVCSPLTNH-------KLIHGAFQVFNNISPFVKFAHFTSN 229 5789*****************************8889*************999999655443.......3456799************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 qaIlea+++ ervHi+D+di+qGlQWpaL++ La+R egpp++R+Tg+g s e l etg++L +fA++lg++fef+++v k + +l++L++++g Lsa007309 230 QAILEAFQRRERVHIVDLDIMQGLQWPALFHILATRMEGPPHVRMTGMGT----SMELLVETGKQLLNFAKRLGMSFEFHPVVKKFGDVADLSMLQIRRG 325 **********************************************....9**********************6555555569***** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 +alaV++ h+l+d +++ + +++l+++l+P+++++veq+++h ++sFl+rf+ +l+yysa+fd+l a lp++++ r+ vE+ l++rei nv+a Lsa007309 326 DALAVHWLQ--HSLYDATGTDWK----TMRLLQELNPRIITLVEQDISH-GGSFLDRFVGSLHYYSAIFDALGAFLPSDDNSRHRVEHSLIHREINNVLA 418 ****9..999988888888....******************.789*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.874	111	419	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.1E-85	137	418	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MRAGFDVVQG ALELIQPHEQ WDYNNTLGAY VTSTATTSSS LNGFSDYSSK APANIERPNE 60 LSEWVEHVTK TLVEDLPHQE SNLEDQSFHT DATLPAANYG VVSPDVCETR PRKIPRGNWS 120 DDVRSCGDQG NNKGLNLIAL LFECAVAISV DNLGEAHRMV LELTQMASPY SPSCGERVVA 180 YFAKAMASRV VNSWLGVCSP LTNHKLIHGA FQVFNNISPF VKFAHFTSNQ AILEAFQRRE 240 RVHIVDLDIM QGLQWPALFH ILATRMEGPP HVRMTGMGTS MELLVETGKQ LLNFAKRLGM 300 SFEFHPVVKK FGDVADLSML QIRRGDALAV HWLQHSLYDA TGTDWKTMRL LQELNPRIIT 360 LVEQDISHGG SFLDRFVGSL HYYSAIFDAL GAFLPSDDNS RHRVEHSLIH REINNVLAX

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MRAGFDVVQG ALELIQPHEQ WDYNNTLGAY VTSTATTSSS LNGFSDYSSK APANIERPNE  60
LSEWVEHVTK TLVEDLPHQE SNLEDQSFHT DATLPAANYG VVSPDVCETR PRKIPRGNWS  120
DDVRSCGDQG NNKGLNLIAL LFECAVAISV DNLGEAHRMV LELTQMASPY SPSCGERVVA  180
YFAKAMASRV VNSWLGVCSP LTNHKLIHGA FQVFNNISPF VKFAHFTSNQ AILEAFQRRE  240
RVHIVDLDIM QGLQWPALFH ILATRMEGPP HVRMTGMGTS MELLVETGKQ LLNFAKRLGM  300
SFEFHPVVKK FGDVADLSML QIRRGDALAV HWLQHSLYDA TGTDWKTMRL LQELNPRIIT  360
LVEQDISHGG SFLDRFVGSL HYYSAIFDAL GAFLPSDDNS RHRVEHSLIH REINNVLAX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-111	143	418	25	305	Protein SCARECROW
5b3h_A	1e-111	143	418	24	304	Protein SCARECROW
5b3h_D	1e-111	143	418	24	304	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023743381.1	0.0	protein SCARECROW-like
Swissprot	Q2Z2E9	1e-108	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A2J6JUG4	0.0	A0A2J6JUG4_LACSA; Uncharacterized protein
STRING	XP_002529844.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	1e-110	GRAS family protein