PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007164

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

FAR1

Protein Properties

Length: 737aa MW: 85353.3 Da PI: 6.8434

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58694653	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-11122	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	6.9e-27	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+++++ ++HnHel p Lsa007164 28 EFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNGKWYIHSFIKDHNHELLP 114 6**************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-25	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-23	226	318	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.571	506	542	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.7E-8	516	540	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-7	517	544	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MDINTVSESI KSEPQETMEF DSNEAAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IHSFIKDHNH ELLPSQSHFF 120 RSHRNSDPLK NDTKVRRKTI LSSMSKQYNI YQSTGLESYL RNQDDRGRSL TLEEGDAQIL 180 LESFVTMQEE NPKFFYAVDL NEEHQLRNVF WVDAKGMDDY TNFSDVVSFD TTYFYNKYKI 240 PLVLFIGVNQ HCQPTLLGCG LIADETLFTF IWLFQTWYLA MGSKSPNVIV TDQSNSLEAA 300 IVAVFPDTRH CYNLWNVLEK VSRQLDYLNP WHDTFMAKFS KCIQKSWTEE KFDKRWGKLV 360 NKFNLNDDTW FQSLYQDRKL WAPTFIKNIS FAGLSTFSRS ESPNSFFDKY IHPETSLKEF 420 LEQYKVIMED IHEEQAKADF DTWHDTPELK SPSPFEKQLS FVYTHEIFKK FQDEVLGAAA 480 CHLKIEKEEG NCVTYVVKDF ETSQDYMVEW NETQLDINCS CRTFEFKGFL CRHAVVVLQM 540 SGVFSVPFKY VLQRWTNAAQ SKYPISEKLE NVQTKTRRLN DLCRRAIILG EEGSISQESY 600 KIALGAIKDA LVQCSNVNNN NNNNNSVVNE VSVRPSTSTY EEEEQVPNLN VEKLKKGVKR 660 TENGKEKVAT QPEVVNIGID ASFHHMELPN TRLLQLHNMM PPHLQGVVVV PTMFHNVASS 720 QFHNVASAQL QNTRLPH

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MDINTVSESI KSEPQETMEF DSNEAAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IHSFIKDHNH ELLPSQSHFF  120
RSHRNSDPLK NDTKVRRKTI LSSMSKQYNI YQSTGLESYL RNQDDRGRSL TLEEGDAQIL  180
LESFVTMQEE NPKFFYAVDL NEEHQLRNVF WVDAKGMDDY TNFSDVVSFD TTYFYNKYKI  240
PLVLFIGVNQ HCQPTLLGCG LIADETLFTF IWLFQTWYLA MGSKSPNVIV TDQSNSLEAA  300
IVAVFPDTRH CYNLWNVLEK VSRQLDYLNP WHDTFMAKFS KCIQKSWTEE KFDKRWGKLV  360
NKFNLNDDTW FQSLYQDRKL WAPTFIKNIS FAGLSTFSRS ESPNSFFDKY IHPETSLKEF  420
LEQYKVIMED IHEEQAKADF DTWHDTPELK SPSPFEKQLS FVYTHEIFKK FQDEVLGAAA  480
CHLKIEKEEG NCVTYVVKDF ETSQDYMVEW NETQLDINCS CRTFEFKGFL CRHAVVVLQM  540
SGVFSVPFKY VLQRWTNAAQ SKYPISEKLE NVQTKTRRLN DLCRRAIILG EEGSISQESY  600
KIALGAIKDA LVQCSNVNNN NNNNNSVVNE VSVRPSTSTY EEEEQVPNLN VEKLKKGVKR  660
TENGKEKVAT QPEVVNIGID ASFHHMELPN TRLLQLHNMM PPHLQGVVVV PTMFHNVASS  720
QFHNVASAQL QNTRLPH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733239.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
Refseq	XP_023733240.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A251VPY2	0.0	A0A251VPY2_HELAN; Putative FAR1-related sequence 4
STRING	XP_006493664.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]