PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007133
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 358aa    MW: 40966.4 Da    PI: 5.4423
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-9822PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.99.8e-50641971127
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                lppGfrFhPtdeel+v+yL++k +++      ++  ++i++vd+yk++Pw+Lp+ +  ++kewyfF++rd+ky++g+r+nr+t +gyWkatg dk++++k
  Lsa007133  64 LPPGFRFHPTDEELIVHYLCRKSRSTAelvgvVPPPSIIADVDLYKHDPWELPELALFGTKEWYFFTPRDRKYPNGSRPNRVTGNGYWKATGADKPIKRK 163
                79*********************999978777444569***************76667899*************************************98 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyr 127
                   ++ vg+kk Lvfy g+ pkg kt+W+mheyr
  Lsa007133 164 sdPNTIVGIKKALVFYAGKGPKGIKTNWIMHEYR 197
                665667***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-6060225IPR003441NAC domain
PROSITE profilePS5100557.44264225IPR003441NAC domain
PfamPF023651.5E-2665197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
XLNSPHLQLP DSDFNSHTFQ LQPDRRLPDR DSIQVNFGSI ALEDEIAVEI RNKKGKDAEA  60
ELNLPPGFRF HPTDEELIVH YLCRKSRSTA ELVGVVPPPS IIADVDLYKH DPWELPELAL  120
FGTKEWYFFT PRDRKYPNGS RPNRVTGNGY WKATGADKPI KRKSDPNTIV GIKKALVFYA  180
GKGPKGIKTN WIMHEYRPNS TPSNKHTDST ISKLEDWVLC RLYNKKNNPK EKITPEDNNI  240
HHSRDLHPAS PLDESQSNNS DSTNSFEKSE GEFGGNFEGD VMFLSDMPPE SLTKVKGTSE  300
QSSMKVMENL VQREDDGNDW LDNLSLEDLN HWLEAMPPNH DVYELPIIYN PNQQYFFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-78532274170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023741738.10.0NAC domain-containing protein 67-like
SwissprotQ52QH41e-80NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A2J6MAT10.0A0A2J6MAT1_LACSA; Uncharacterized protein
STRINGVIT_06s0004g00020.t017e-84(Vitis vinifera)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]