PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007022
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 175aa    MW: 19429.4 Da    PI: 9.3615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58670822PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-203384256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+G+r+++ +gr++AeIrdp+ ng  +r +lg+f+taeeAa+a+++a+ +l+g+
  Lsa007022 33 KYRGIRRRP-WGRYAAEIRDPTRNG--ARSWLGTFDTAEEAARAYDRAAYALRGH 84
               8********.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-313392IPR001471AP2/ERF domain
SMARTSM003801.1E-323397IPR001471AP2/ERF domain
PROSITE profilePS5103224.7113391IPR001471AP2/ERF domain
CDDcd000181.43E-173393No hitNo description
SuperFamilySSF541711.63E-233392IPR016177DNA-binding domain
PfamPF008475.5E-143384IPR001471AP2/ERF domain
PRINTSPR003671.1E-103445IPR001471AP2/ERF domain
PRINTSPR003671.1E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
IKLTDLKEKS RLEAMESNQE PTGSGERGRR ENKYRGIRRR PWGRYAAEIR DPTRNGARSW  60
LGTFDTAEEA ARAYDRAAYA LRGHQAILNF PNDGHYRNVE SSTAGLPSSS GFASMAALPA  120
NSTLLSMSSS SSPSSNISSR DNNGRSEREP VIELEYLDDK LLEDLLGKHS PNTRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-292893974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754101.11e-114ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2J6LZT21e-112A0A2J6LZT2_LACSA; Uncharacterized protein
STRINGXP_009610278.18e-50(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]