PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006993
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LBD
Protein Properties Length: 280aa    MW: 30570 Da    PI: 6.0504
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-18792PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.47.2e-314107199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++dC ++p++     p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q ++e++
  Lsa006993   4 SCNGCRVLRKGCSEDCSIRPCLqwikdPESQGNATVFLAKFYGRAGLMNLINAGPEHLRSAIFRSLLYEACGRIVNPIYGSVGLLWSGRWQLCQDAVEAV 103
                6************************************************************************************************998 PP

     DUF260  96 llke 99 
                l ++
  Lsa006993 104 LKGS 107
                8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381558.2E-881268IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.7283109IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKD PESQGNATVF LAKFYGRAGL MNLINAGPEH  60
LRSAIFRSLL YEACGRIVNP IYGSVGLLWS GRWQLCQDAV EAVLKGSPIV QISSDTEEPN  120
NGPPLKAYDI RHISKDENSG GSNELHRIRT RCRFKRSGSK GKAKTNRVCV GSSDHEESGH  180
DEVNNRSSSH ESTLSHQSEA AHVVEGESHE TAEESLVSVE TAEGSAAAPT MQDKKDEIEL  240
ELTLGFERSR SPGSLGKAAE DSDNSGDTVY RMELGLGYPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770949.10.0LOB domain-containing protein 41-like
SwissprotQ9M8867e-96LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2J6KY310.0A0A2J6KY31_LACSA; Uncharacterized protein
STRINGXP_009607764.11e-117(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-91LOB domain-containing protein 41