PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa006947 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 9150.19 Da PI: 10.0126 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 12 | 58 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 g+WT+ + + +a + + ++ +W+ +a+ +g g+t++++k ++ Lsa006947 12 GSWTAKQNKAFEKALAVFDKDtpdRWHNVAKAVG-GKTAEEVKQHYEV 58 89********************************.**********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.883 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 1.6E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-6 | 12 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.42E-13 | 12 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-7 | 12 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-6 | 14 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MASSSMSSRG SGSWTAKQNK AFEKALAVFD KDTPDRWHNV AKAVGGKTAE EVKQHYEVLV 60 EDVKHIENGR VPFPNYRRTT GGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-38 | 7 | 82 | 3 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023741329.1 | 2e-56 | protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 1e-37 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2J6MJ33 | 4e-55 | A0A2J6MJ33_LACSA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_62.157 | 8e-46 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-36 | RAD-like 1 |
Publications ? help Back to Top | |||
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