PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa006451 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||||||
Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 261aa MW: 30467.6 Da PI: 9.6265 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.1 | 7.3e-31 | 44 | 93 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fs++g+lyey+ Lsa006451 44 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRLYEYA 93 79***********************************************8 PP | |||||||
2 | K-box | 98.8 | 7.7e-33 | 114 | 208 | 8 | 100 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 l+e++a+ +qqe++kL+++i++ q ++Rhl+Ge+L+ L++keL+qLe++Le++++kiRskK++++l+++e lqk+e el+++n+ Lr+k++e Lsa006451 114 TfsLQETNAQFYQQEAKKLRQQIQMRQDSNRHLMGEGLDCLNMKELKQLETRLERGISKIRSKKHDMILAEMEFLQKREVELEHHNTFLRSKIAE 208 14599***************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.894 | 36 | 96 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-41 | 36 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.77E-43 | 37 | 110 | No hit | No description |
SuperFamily | SSF55455 | 9.42E-33 | 37 | 112 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 38 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 38 | 58 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-26 | 45 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 58 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-32 | 73 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.1E-24 | 118 | 206 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.616 | 122 | 212 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
XEAWFVGFLR LPSIEERLKR GDFLERGVLS SSKENMGRGK IEIKRIENNT NRQVTFCKRR 60 NGLLKKAYEL SVLCDAEIAL IVFSTRGRLY EYANNNMRST IEKYKKATSN TPNTFSLQET 120 NAQFYQQEAK KLRQQIQMRQ DSNRHLMGEG LDCLNMKELK QLETRLERGI SKIRSKKHDM 180 ILAEMEFLQK REVELEHHNT FLRSKIAENE RVQQHEVDGA EQYNAIQAYL ARNSLQLNIM 240 EPLEDAPSAY PLLPNKSLHI G |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-22 | 36 | 104 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023760420.1 | 1e-167 | agamous-like MADS-box protein AGL11 | ||||
Swissprot | F6I457 | 1e-106 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A2J6LL66 | 1e-166 | A0A2J6LL66_LACSA; Uncharacterized protein | ||||
STRING | Solyc11g028020.1.1 | 1e-111 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400013248 | 1e-111 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09960.1 | 2e-99 | MIKC_MADS family protein |