PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006394

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 359aa MW: 41646.4 Da PI: 7.7925

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-10342	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.2	1.3e-11	74	121	3	54
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++k +rr+++NReAAr+sR++Kka++ eLe +Le+ + e+++ ++ Lsa006394 74 SDKFQRRLAQNREAARKSRLKKKAYVRELESGRLKLEKLEH----EIKRTRQ 121 5799**************************97777776665....4444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-4	72	132	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.91	74	124	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.3E-8	75	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	76	123	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-8	78	124	No hit	No description
PROSITE pattern	PS00036	0	79	94	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.9E-22	157	229	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MAPTSTQFST STRMGTYDPL HHVSMSNHIF EDHMSTKKSH TIINQPEATR LTNNMEYTSQ 60 ESLESYRESD KNISDKFQRR LAQNREAARK SRLKKKAYVR ELESGRLKLE KLEHEIKRTR 120 QQVTYVDPPG YGQLPGIATF VAKYDLWVVE QHKKESELMT ILQTDVSDDE LRVVLDGVID 180 HYQDLFWMKA DAAKVDAFNL LYGSWRSPIE RLFEWLGGFR PSEVLYILMP WFEPLTDTQI 240 VNLSKLRHTC RQAEDALTQG IDKLEQTLAQ SVAINITESA NCNTWMISAM EELQALENFL 300 NQADHLRYRT LQQMSRVLTN RQAAKGLLAL GEYFQRLRVL NSLWSARPHG LDFVVGRKM

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MAPTSTQFST STRMGTYDPL HHVSMSNHIF EDHMSTKKSH TIINQPEATR LTNNMEYTSQ  60
ESLESYRESD KNISDKFQRR LAQNREAARK SRLKKKAYVR ELESGRLKLE KLEHEIKRTR  120
QQVTYVDPPG YGQLPGIATF VAKYDLWVVE QHKKESELMT ILQTDVSDDE LRVVLDGVID  180
HYQDLFWMKA DAAKVDAFNL LYGSWRSPIE RLFEWLGGFR PSEVLYILMP WFEPLTDTQI  240
VNLSKLRHTC RQAEDALTQG IDKLEQTLAQ SVAINITESA NCNTWMISAM EELQALENFL  300
NQADHLRYRT LQQMSRVLTN RQAAKGLLAL GEYFQRLRVL NSLWSARPHG LDFVVGRKM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023743268.1	0.0	transcription factor TGA3-like isoform X2
Refseq	XP_023743269.1	0.0	transcription factor TGA3-like isoform X2
Swissprot	Q93ZE2	1e-112	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A2J6JUT1	0.0	A0A2J6JUT1_LACSA; Uncharacterized protein
STRING	XP_009588814.1	1e-127	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]