PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006218

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 430aa MW: 47645.4 Da PI: 8.9002

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-45315	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5e-10	145	181	3	39
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 e k rr+++NReAAr+sR+RKka++++Le+ +L+ Lsa006218 145 EQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLT 181 56889*************************8554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.1E-8	139	192	No hit	No description
SMART	SM00338	0.0017	143	196	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-7	145	182	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.99	145	189	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.37E-6	147	187	No hit	No description
PROSITE pattern	PS00036	0	150	165	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.0E-30	227	302	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MGSKSFKVGG KANTSVGASM PSFVSQIPIS NSNGVESNAG QSSRVSNFGS PEQSLGLRGV 60 YNSTALIDQS VHSDLQFATY DKMLQGQNSN REAWLESNIM GDGSPHTDTS TEMDPDDNNQ 120 SFDIVPSNPF MASGSSDKQK EKFPEQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLKL 180 TQLEQEVQRA RKQGVVISNS SDQTQPNGGS LAFVAEYSRW LEEQSKHISE LRTAVTSHRS 240 DNELRSLVEN ATSHFNGIFR LKRTAAKADV FHIIYGMWTS PAERCFLWIG GFRSSELLKL 300 LVSHLEPLTE QQLASIDHLQ QTSLQAEEAL SQGMDALQQS LAQTLASDAP VVPAGSSGMA 360 NYMGQMAMAM GKLGSLENFL RQADHLREKT LQQMHTILTT RQSARALLAI NDYFSRLRAL 420 STLWLARPQE

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MGSKSFKVGG KANTSVGASM PSFVSQIPIS NSNGVESNAG QSSRVSNFGS PEQSLGLRGV  60
YNSTALIDQS VHSDLQFATY DKMLQGQNSN REAWLESNIM GDGSPHTDTS TEMDPDDNNQ  120
SFDIVPSNPF MASGSSDKQK EKFPEQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLKL  180
TQLEQEVQRA RKQGVVISNS SDQTQPNGGS LAFVAEYSRW LEEQSKHISE LRTAVTSHRS  240
DNELRSLVEN ATSHFNGIFR LKRTAAKADV FHIIYGMWTS PAERCFLWIG GFRSSELLKL  300
LVSHLEPLTE QQLASIDHLQ QTSLQAEEAL SQGMDALQQS LAQTLASDAP VVPAGSSGMA  360
NYMGQMAMAM GKLGSLENFL RQADHLREKT LQQMHTILTT RQSARALLAI NDYFSRLRAL  420
STLWLARPQE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023741297.1	0.0	transcription factor TGA2.3-like isoform X1
Swissprot	O24160	0.0	TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBL	A0A2J6JZ05	0.0	A0A2J6JZ05_LACSA; Uncharacterized protein
STRING	VIT_08s0007g05170.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-142	TGACG motif-binding factor 6