PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006212

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

FAR1

Protein Properties

Length: 784aa MW: 89840.4 Da PI: 6.3923

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-17157	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102.8	3.4e-32	77	168	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka++ vk +++gkw v+++++eHnHel+p Lsa006212 77 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASMSVKIQDSGKWIVSTFVKEHNHELVP 168 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-30	77	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-31	290	381	IPR018289	MULE transposase domain
Pfam	PF04434	5.7E-12	557	603	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.004	569	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-9	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MENEVIEFDI GLGGGGDDSV AIIDDEEMTD DSPTAAMVGT SSGSLFFDTS TYVPQRDLDL 60 EPFEGMEFES EEAAKGFYNS YARRVGFSTR VSSSRRSRKD GAIIQRSFVC AKEGFRNLNE 120 KRTKDREIKR PRTVTRVGCK ASMSVKIQDS GKWIVSTFVK EHNHELVPPD QVHCLRSHRQ 180 ISGPAKTLID TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RQRSLEGDIQ 240 LLLDYLKQMQ AENPSFFYAV QGDEEQSTGN LFWADTKARS NYTHFGDTFT FDTTYRSNRY 300 RLPFAPFTGI NHHGQPVLFG CAFLINESES SFVWLFKTWV SAMSSRLPVS ITTDHDTVIR 360 SAIMQVFPDT RHRFCKWHIF KKCQEKLSHV FLKYPNFEAD FHKSVNLTDS VDEFEACWLS 420 LVDKYDLSDH DWLQAIYTSR KQWVPVYLRD TFFAEMSITQ RSDSMNSYFD GYINASTTLN 480 QFIKLYEKAL ESRNEKEVKA DYDTMNSLPL LRTPSPMEKQ ASELYTRKIF MRFQEELIGT 540 LTLMASKVED NGEVTTYQVS KFGEDNKSYS VNFNVLEMRA TCSCCMFEFS GLLCRHVLAV 600 FRVTNVLTLP SCYILKRWTI NAKSSVILEE RGNDAFSGYL ESHTVRYNTL RHEAFKFVEE 660 GAESVDTYNV AMVALEEAAR KVAMSAKNEG TGFMVNGRSR EDSRSNGTLT KMDIGNHCGH 720 LDQNLSEDEM DRKIEELKQE VDSGRRKCEV YRSNLVSVLR DIEDHKQQLS LKVQIIKYSM 780 KDCL

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MENEVIEFDI GLGGGGDDSV AIIDDEEMTD DSPTAAMVGT SSGSLFFDTS TYVPQRDLDL  60
EPFEGMEFES EEAAKGFYNS YARRVGFSTR VSSSRRSRKD GAIIQRSFVC AKEGFRNLNE  120
KRTKDREIKR PRTVTRVGCK ASMSVKIQDS GKWIVSTFVK EHNHELVPPD QVHCLRSHRQ  180
ISGPAKTLID TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RQRSLEGDIQ  240
LLLDYLKQMQ AENPSFFYAV QGDEEQSTGN LFWADTKARS NYTHFGDTFT FDTTYRSNRY  300
RLPFAPFTGI NHHGQPVLFG CAFLINESES SFVWLFKTWV SAMSSRLPVS ITTDHDTVIR  360
SAIMQVFPDT RHRFCKWHIF KKCQEKLSHV FLKYPNFEAD FHKSVNLTDS VDEFEACWLS  420
LVDKYDLSDH DWLQAIYTSR KQWVPVYLRD TFFAEMSITQ RSDSMNSYFD GYINASTTLN  480
QFIKLYEKAL ESRNEKEVKA DYDTMNSLPL LRTPSPMEKQ ASELYTRKIF MRFQEELIGT  540
LTLMASKVED NGEVTTYQVS KFGEDNKSYS VNFNVLEMRA TCSCCMFEFS GLLCRHVLAV  600
FRVTNVLTLP SCYILKRWTI NAKSSVILEE RGNDAFSGYL ESHTVRYNTL RHEAFKFVEE  660
GAESVDTYNV AMVALEEAAR KVAMSAKNEG TGFMVNGRSR EDSRSNGTLT KMDIGNHCGH  720
LDQNLSEDEM DRKIEELKQE VDSGRRKCEV YRSNLVSVLR DIEDHKQQLS LKVQIIKYSM  780
KDCL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747969.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_023747970.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A251SKF2	0.0	A0A251SKF2_HELAN; Putative FAR1-related sequence 5
STRING	EOX98949	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]