PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006210
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 468aa    MW: 50050.1 Da    PI: 8.7546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689790PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-37136PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.3e-125480127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++t+ C +++rtGtC yG++C+++H+p
  Lsa006210 54 PGTADCAYYMRTGTCGYGSKCRYNHPP 80
               68***********************96 PP
2zf-CCCH41.52.2e-13103129127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C++++rtGtCk+G++CkF+H++
  Lsa006210 103 PGEPPCQYYLRTGTCKFGASCKFHHPR 129
                5899*********************96 PP
3zf-CCCH36.96.2e-12151175327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+++++tG+Ck+G +CkF+H++
  Lsa006210 151 EKECSYYLKTGQCKFGITCKFHHPQ 175
                689********************97 PP
4zf-CCCH39.78.1e-13317343127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+++++tG Ck+G++Ck++H+p
  Lsa006210 317 PGQPECQYYMKTGDCKFGASCKYHHPP 343
                5789*********************97 PP
5zf-CCCH34.24.4e-11363388126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++ e C+f++++G+Ck+G +CkF H+
  Lsa006210 363 PGVEACNFYMQNGHCKFGRTCKFDHP 388
                5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.3E-75380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0565381IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-105480IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-65481IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55979IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.671102130IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7102129IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-11104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5107130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6148176IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-5148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605148176IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4154174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.967316344IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-7316343IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10318343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4322342IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6362389IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793362390IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8364388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6364390IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4366387IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MELYGRSTGR NGSQTDHTQQ PEWIQPGTET GLEESMRRLG LWGGRGGEFY PERPGTADCA  60
YYMRTGTCGY GSKCRYNHPP DRSSSAGGAA RSVGGGGAYP ERPGEPPCQY YLRTGTCKFG  120
ASCKFHHPRH AGGSLSNVPL NTYGYPLRPE EKECSYYLKT GQCKFGITCK FHHPQPTGES  180
MSASASARPF YSTVQSTSPE QQQQQQQQFV GGPGGGYRVA SARPPLVPGS YAPAAAYGPI  240
LLSPGMLPLP PNWSPYSGRV SPVLSPGAPQ PQPASVYGVN SSFAGAGAGA GAGGHFRPLP  300
PPSPGPSQTE RVFPERPGQP ECQYYMKTGD CKFGASCKYH HPPDWVLSQA NCMLSPIGLP  360
LRPGVEACNF YMQNGHCKFG RTCKFDHPLP GAVTYGGPSE LPIPTIPASI SFSERSKMDT  420
MFTQGQTQTG SSPEVQISGQ TLLRQGSGAA GGFRLFHLLH LSGVTYSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744607.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-145C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2J6MAF00.0A0A2J6MAF0_LACSA; Uncharacterized protein
STRINGXP_009776613.11e-158(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-129C3H family protein