PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006174

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 569aa MW: 63080.5 Da PI: 6.4665

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58691532	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-6337	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	271.3	3e-83	209	567	3	369
GRAS 3 elLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++L+++Ae + sg+++ aq +Larl+++ +s + +p+qR +yf++AL++++a + + p + + +n ++ a+kl+sevsPi++f ++t Lsa006174 209 DQLFAAAELMLSGNFSHAQGILARLNHQlpsamSSCNYNPIQRSGFYFKQALQTQMAF-LTPIPIPNPNPNPTLSNGMFKMCAYKLLSEVSPIIQFINFT 307 79**********************9877664555669**************9.445544444444555789999**************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 Nq++lea+ ++ +HiiDfdi+ G+QW++++q+L ++++ sl+iT+++sp++++ el ++e+L++fA+++g++f+ +v+ +++++++++++v+ Lsa006174 308 SNQTLLEALGDSDYIHIIDFDIGIGAQWASFIQELPRKNNNGCSLKITAFASPSTHHPVELGLMHENLSQFAHQIGISFQLEVV---NFDSFDPNSFSVS 404 *******************************************************************************8...9******** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivn 296 + a+aVn+ + ++ l+ ++++L+++k++sP++vv ++ ++++ +F + +l+ l+yy +l+ds+ +a++p+ +++k+E +ll+++i + Lsa006174 405 GNYAIAVNFPIWSTSTR-----LPA-IPSLLHFIKQVSPRIVVALDRGNERTDLPFPQYLLQGLQYYEVLLDSIdAANVPP--YTANKIEMFLLEPQINS 496 ******9655554.....444.667*****************************************6677755..67899******** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvs 369 +v+ + ++ e + +W+ +++ G+ pv++s++a++qa++++++ + + g++ve ++ slvl+W++r+L++ Lsa006174 497 MVTGKLQS----PEPMPHWKTLFTAGGYFPVTMSSFAEAQADCVVKRSQaqGSGFHVERRHSSLVLCWQNRQLMA 567 99988....*******************************99955667*****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.981	181	550	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-80	209	567	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MVDEEVALVI QSSNLNSNSK EGSNNSNGGP ISVLDTRRSS SPSTSTSSFT TNVNNIHQKW 60 PEEMGFRISE SVANLADWSA LHPIAPEFCL QHKRFGVGVG LDDMLSGGSH EQDHDLLRWI 120 SGDVDVTLLQ IDENAPPSPL NLPPQNPHKN YNSQHPGHRK PPAFDQSHEF LLKKQNQQLS 180 LHQQKSMIAA MAVAKQEPPS PPQKQLICDQ LFAAAELMLS GNFSHAQGIL ARLNHQLPSA 240 MSSCNYNPIQ RSGFYFKQAL QTQMAFLTPI PIPNPNPNPT LSNGMFKMCA YKLLSEVSPI 300 IQFINFTSNQ TLLEALGDSD YIHIIDFDIG IGAQWASFIQ ELPRKNNNGC SLKITAFASP 360 STHHPVELGL MHENLSQFAH QIGISFQLEV VNFDSFDPNS FSVSGNYAIA VNFPIWSTST 420 RLPAIPSLLH FIKQVSPRIV VALDRGNERT DLPFPQYLLQ GLQYYEVLLD SIDAANVPPY 480 TANKIEMFLL EPQINSMVTG KLQSPEPMPH WKTLFTAGGY FPVTMSSFAE AQADCVVKRS 540 QAQGSGFHVE RRHSSLVLCW QNRQLMAGV

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MVDEEVALVI QSSNLNSNSK EGSNNSNGGP ISVLDTRRSS SPSTSTSSFT TNVNNIHQKW  60
PEEMGFRISE SVANLADWSA LHPIAPEFCL QHKRFGVGVG LDDMLSGGSH EQDHDLLRWI  120
SGDVDVTLLQ IDENAPPSPL NLPPQNPHKN YNSQHPGHRK PPAFDQSHEF LLKKQNQQLS  180
LHQQKSMIAA MAVAKQEPPS PPQKQLICDQ LFAAAELMLS GNFSHAQGIL ARLNHQLPSA  240
MSSCNYNPIQ RSGFYFKQAL QTQMAFLTPI PIPNPNPNPT LSNGMFKMCA YKLLSEVSPI  300
IQFINFTSNQ TLLEALGDSD YIHIIDFDIG IGAQWASFIQ ELPRKNNNGC SLKITAFASP  360
STHHPVELGL MHENLSQFAH QIGISFQLEV VNFDSFDPNS FSVSGNYAIA VNFPIWSTST  420
RLPAIPSLLH FIKQVSPRIV VALDRGNERT DLPFPQYLLQ GLQYYEVLLD SIDAANVPPY  480
TANKIEMFLL EPQINSMVTG KLQSPEPMPH WKTLFTAGGY FPVTMSSFAE AQADCVVKRS  540
QAQGSGFHVE RRHSSLVLCW QNRQLMAGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-27	247	566	38	369	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023744746.1	0.0	scarecrow-like protein 6
TrEMBL	A0A2J6JRQ8	0.0	A0A2J6JRQ8_LACSA; Uncharacterized protein
STRING	XP_006477215.1	1e-146	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	8e-87	GRAS family protein