PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006038

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GeBP

Protein Properties

Length: 373aa MW: 41447.6 Da PI: 8.6637

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-43410	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	104.6	7.7e-33	148	245	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskkiWg 97 lfqrlwse+ ei l+ G+i++ +++gk+p++d+++f++fvkks++++v+++q++ K+rrL+kK++++v++ +s+k sfs++h++k++elsk +Wg Lsa006038 148 LFQRLWSEDNEIELIEGMINYVNEKGKDPVADVNDFHDFVKKSLHVDVNNKQVIAKVRRLRKKYENNVARaeNQSKKVRSFSNPHEKKMYELSKNLWG 245 79****************************************************************996556778899***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.5E-30	149	245	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MAGSESEPAN SSSGEEEEVS SEGSESESEP DKTSTPPPSS KKTQLTHNSS SDESGSESES 60 DTDKPPEKPT IPDPSIKPIA SKPMEDDQSK KPRSKIPTTR YSPPPLKSST GKRPAAEGEP 120 QDLKRVKKKT VVAVAAPDAG NGGEKKQLFQ RLWSEDNEIE LIEGMINYVN EKGKDPVADV 180 NDFHDFVKKS LHVDVNNKQV IAKVRRLRKK YENNVARAEN QSKKVRSFSN PHEKKMYELS 240 KNLWGNDSNK NVVMSSTIKK VNVTPKPNKN RKSNVNGGGE PEPEPELEVT PKEVQPKVVQ 300 PLRSDHGSMG FMFTDEAIMN KGLELLSAPK KLEMEEKWKN LKVQELKHFL KKVELLKEQG 360 EIVLNAMVKS GDN

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MAGSESEPAN SSSGEEEEVS SEGSESESEP DKTSTPPPSS KKTQLTHNSS SDESGSESES  60
DTDKPPEKPT IPDPSIKPIA SKPMEDDQSK KPRSKIPTTR YSPPPLKSST GKRPAAEGEP  120
QDLKRVKKKT VVAVAAPDAG NGGEKKQLFQ RLWSEDNEIE LIEGMINYVN EKGKDPVADV  180
NDFHDFVKKS LHVDVNNKQV IAKVRRLRKK YENNVARAEN QSKKVRSFSN PHEKKMYELS  240
KNLWGNDSNK NVVMSSTIKK VNVTPKPNKN RKSNVNGGGE PEPEPELEVT PKEVQPKVVQ  300
PLRSDHGSMG FMFTDEAIMN KGLELLSAPK KLEMEEKWKN LKVQELKHFL KKVELLKEQG  360
EIVLNAMVKS GDN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758643.1	0.0	GLABROUS1 enhancer-binding protein-like
TrEMBL	A0A2J6MH73	0.0	A0A2J6MH73_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-24	DNA-binding storekeeper protein-related transcriptional regulator