PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005967
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 360aa    MW: 40296.8 Da    PI: 9.0768
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685356PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-51285PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA24.73.3e-08179198120
       GATA   1 CsnCgttkTplWRrgpdgnk 20 
                Cs C ttkTplWR+gp+g+k
  Lsa005967 179 CSDCCTTKTPLWRSGPRGPK 198
                ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-4173215IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-6177198IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.906177196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTPIFLNSSS TYYSPYPNDF HHEDHLSNQY LSPNSQASSS LNSLTANMFL NSTVHDQNRI  60
FDMELYSPQH QHEGGIFGSQ DYNHQTENSE EKGDQIFTWN KGEMINNMNN DQNQMKLMSS  120
KMRVMLKMKK SDPVNLNTYS STTQQVTKLE DHKLPTSIQE TENSSNSTSS NNNIPIRVCS  180
DCCTTKTPLW RSGPRGPKVH TVVELNFXIS SLLGNWHFLW DPTKKSKKSI AAAAEAENGD  240
SNVSIDQSIT NRLKVKKNHH KDHKKPSNGY VAKLKKRKYS KHITTTPPTP TPSPSPSPST  300
SPPPSPAASP SSSSPPRKNC VEEFLVSLSK NLSFHRVFPQ DEKEAAILLM ALSCGKAHET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263277KKPSNGYVAKLKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744412.11e-174GATA transcription factor 21-like
TrEMBLA0A2J6JSJ41e-173A0A2J6JSJ4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-09GATA family protein