PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa005898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | Nin-like | ||||||||
Protein Properties | Length: 195aa MW: 22070.8 Da PI: 9.14 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.7 | 3.5e-26 | 38 | 86 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s e++s++F++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl Lsa005898 38 ALSRETISQFFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 86 6899******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.257 | 19 | 106 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.5E-21 | 39 | 86 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MVRSGYEKPQ KKLDHKGDNG NGYGNNGGCD SNYPSRMALS RETISQFFYM PITQAAKELN 60 VGLTLLKKRC RELGIRRWPH RKLMSLQTLI NNVQELEKSS GNGVEEKLQE AIMRLENERK 120 KMEEIPDLQL EDNTKRLRQA CFKANYKKRK TIGNNSSTSI TTYRQSPSSC SSTCVDNGGY 180 EAIEGGYGGD FAEQE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023761275.1 | 1e-142 | uncharacterized protein LOC111909726 | ||||
Swissprot | Q9M9U9 | 1e-53 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A2J6LJA1 | 1e-140 | A0A2J6LJA1_LACSA; Uncharacterized protein | ||||
STRING | XP_004301148.1 | 2e-58 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 3e-54 | RWP-RK domain-containing protein |