PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa005894 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||||||
Protein Properties | Length: 187aa MW: 20583.9 Da PI: 4.5535 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.2e-16 | 33 | 78 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 G+ ++++g+WvAeIr+p++ + r++lg++ tae+Aa+a++ a+++l+g Lsa005894 33 GI--RSRNGKWVAEIREPRK---SSRIWLGTYPTAEMAAAAYDVAALALKG 78 55..5789*********854...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.111 | 17 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-23 | 30 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-25 | 32 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.21E-14 | 33 | 87 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-17 | 34 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-9 | 36 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDARETRLTC AMNTSFSTGG SSSASGKHPT LHGIRSRNGK WVAEIREPRK SSRIWLGTYP 60 TAEMAAAAYD VAALALKGGD AMLNFQEFVG SYRVPESPEP ALIRSAAGEA AELMKLFREK 120 EDDHKKQGGD EGETHQNDEF MDEEAIFDMP NLLVDMAEGM MVSPPRQPTT VEWSSGNSSE 180 CDNLWSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023752075.1 | 1e-139 | ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q9FJ90 | 3e-42 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A2J6M4F5 | 1e-137 | A0A2J6M4F5_LACSA; Uncharacterized protein | ||||
STRING | XP_010278525.1 | 5e-53 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-40 | ERF family protein |
Publications ? help Back to Top | |||
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