PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005889
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CPP
Protein Properties Length: 732aa    MW: 79646.7 Da    PI: 6.2157
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-52114PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.34.8e-16446484240
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  Lsa005889 446 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKP 484
                589**********************************96 PP
2TCR536.9e-17529568140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                ++k+gCnCkks ClkkYCeCf+ g+ Cs +C+Ce+CkN+ 
  Lsa005889 529 RHKRGCNCKKSGCLKKYCECFQGGVGCSINCRCEGCKNTF 568
                589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-16445486IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.564446569IPR005172CRC domain
PfamPF036381.2E-11448483IPR005172CRC domain
SMARTSM011141.3E-18529570IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-12531567IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MGDEKDQDKE SAVVVMDTPE RTQIATPLSK FEDSPVFNYI NSLSPIKPVK SVHFTQTFSA  60
LSFASLPSVF TSPHVSSLKD SRFLRRHQFS DPSKPELTSE DAKKSDTNEG NPNVTQNSLN  120
PQTEFNSDSV SETSVVPSNR PSNLESRKLS YEAVSPDTIN TSKMDNPSSS SIVPFVNNHS  180
ANDPIRIESD IEGIDSLHNK VSACDWDSLI SDASELLNFD SPSDTIPYKG PTQTTLDQKP  240
EAKNDNPSEK HEGASTSLNN FEVGELADDM EDNEVGSNLY RGMRRRCLVF EMMGSRRKHL  300
EDISNVTDSN ETGLPNDNSL IPMRTGNGNG NGNGNESSRC ILPGIGLHLN ALASTLVDQK  360
VVKHESSGSG GQLIIAPPSA AYNSTPSGQE LITSMGDASG LENDQSGVPV TEDVSKALGF  420
VVNEELSQSS PRKKRRRMEH AGETEACKRC NCKKSKCLKL YCECFAAGVY CVEPCSCQEC  480
FNKPIHEDTV LQTRKQIESR NPLAFAPKVI KTSDSMQEDE SSNTPASARH KRGCNCKKSG  540
CLKKYCECFQ GGVGCSINCR CEGCKNTFGR KDGSEMDPEM NVVDECEGNG TDGRFQKMAI  600
HHEVEPISAT PPTPSRFDRQ SISMISSSKG KPPRSFLAIG SSASSSQRFG KLNPFKVGMK  660
TAADNKQLQT VGEDKIPEIL EENGSPISGV KSCSPNSKRV SPPHSGLGQR SSRKLILQSI  720
PSFPCLTPNS KH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1845056614120Protein lin-54 homolog
5fd3_B4e-1845056614120Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023730306.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2J6KNQ90.0A0A2J6KNQ9_LACSA; Uncharacterized protein
STRINGEOY057570.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-151TESMIN/TSO1-like CXC 2