PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa005836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | AP2 | ||||||||
Protein Properties | Length: 560aa MW: 61840.2 Da PI: 6.7586 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.2 | 1.3e-15 | 265 | 324 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Lsa005836 265 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 324 78*******************655454478446*************************98 PP | |||||||
2 | AP2 | 44.4 | 4.1e-14 | 367 | 418 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t e+Aa+a++ a+ k++g Lsa005836 367 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEDAAEAYDVAAIKFRG 418 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.08E-22 | 265 | 333 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-16 | 265 | 334 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-12 | 265 | 324 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-29 | 266 | 338 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-16 | 266 | 333 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 266 | 332 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 267 | 278 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.09E-25 | 367 | 428 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-17 | 367 | 428 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-9 | 367 | 418 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 368 | 426 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-34 | 368 | 432 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-18 | 368 | 427 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 408 | 428 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MKSNDNNNGN NKNSDNWLGF SLSPHSSVAT HSSPSNESNT TSFFTFPSHF NYQNLYCGGV 60 EGVNGGGIYS TFPIMPLKSD GSLCLMDTIT RSQSQGMVAS TTPKLENFFG GVTMGTTDLD 120 TDAMYYNHEN GTQNYQIQPQ HYQDYNGLYQ TIQLQEAKES QIASGSSCGL YLPTIGEGWV 180 STDYHSGSGG GGGGGGGGLQ SLSLSMSPGC SQSSSCVTIS QQQMTPANVT ESVVMETKKR 240 GSEKVDQQKQ IVHRKSLDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQV 300 YLGGYDMEEK AARAYDLAAL KYWGSSTHIN FPVENYEQEL EEMKNMSRQE YVAHLRRRSS 360 GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEDAAEAYD VAAIKFRGVN 420 AVTNFDVSRY NVERIMESNT LLSGELARRT KAREPMTEVV ANEAHNGEHK TLSNDVTSDG 480 SMLEWKTEVY EQNSGGGVEG DESSTIKNNG DSGEECMKRN KNLPMVLGMP PAMNTWIPTV 540 AATTTQLRSH MPIFAAWADA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023762286.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-157 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2J6LH58 | 0.0 | A0A2J6LH58_LACSA; Uncharacterized protein | ||||
STRING | EOX91761 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-139 | AP2 family protein |