PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005813

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 422aa MW: 47498 Da PI: 7.8319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58691688	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-17570	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8e-11	341	386	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ ++++l P+ +k s a++L +Av+YIk+Lq Lsa005813 341 SIAERVRRTRISERMKKIQSLFPTM----DKQTSTADMLDLAVQYIKDLQ 386 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.941	335	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-13	338	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.45E-9	339	390	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-12	340	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-7	341	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-9	341	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MYGDGDSSDA IARDMNSLLH SSTFKHPPEG EFAEIKELIS SDSSYSDYNH HDDEHNHNYS 60 RNQNQGRQIE SSLMRYRSAP SSFYASLLDE NGCDDFLAPV ETSNHTREKF FSSGQHHQHV 120 FQSDSHDFIR YASNIDSKEE GINPKLNHTQ ISNPIFGGNS HQMSHVQPPS NSYNHHTNTN 180 HNQMGSSSTL RTMNLTTSNL IRQSSSPAGF LSSLNAETGF AGMSDVGKPI SSSRLNNRIS 240 FSSVSSSSPP FLPQISENKN DSTFKSLKRT RDSDSMMFPS SITSDIENGS SRHYSPRLVH 300 HMSLPKTSSE MATAEKFLRF EQDSTPCKIR AKRGCATHPR SIAERVRRTR ISERMKKIQS 360 LFPTMDKQTS TADMLDLAVQ YIKDLQKELK TLNDXSGKVY MFNSTITDKN RSKGYCEARS 420 LD

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MYGDGDSSDA IARDMNSLLH SSTFKHPPEG EFAEIKELIS SDSSYSDYNH HDDEHNHNYS  60
RNQNQGRQIE SSLMRYRSAP SSFYASLLDE NGCDDFLAPV ETSNHTREKF FSSGQHHQHV  120
FQSDSHDFIR YASNIDSKEE GINPKLNHTQ ISNPIFGGNS HQMSHVQPPS NSYNHHTNTN  180
HNQMGSSSTL RTMNLTTSNL IRQSSSPAGF LSSLNAETGF AGMSDVGKPI SSSRLNNRIS  240
FSSVSSSSPP FLPQISENKN DSTFKSLKRT RDSDSMMFPS SITSDIENGS SRHYSPRLVH  300
HMSLPKTSSE MATAEKFLRF EQDSTPCKIR AKRGCATHPR SIAERVRRTR ISERMKKIQS  360
LFPTMDKQTS TADMLDLAVQ YIKDLQKELK TLNDXSGKVY MFNSTITDKN RSKGYCEARS  420
LD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023731940.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A2J6KJQ6	0.0	A0A2J6KJQ6_LACSA; Uncharacterized protein