PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005806
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 472aa    MW: 53603.2 Da    PI: 6.5154
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691016PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.87.6e-1271144721373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l+++L++cA+a+s++d++ a  l+++l+e++s +g+p+qRl ay++e+L arl+ + ++l++ l + + +       l+++++++e++P++kf+++ aN 
  Lsa005806 114 LKQVLIACADAISNNDFSTAGILISELREMVSVAGEPIQRLGAYMLEGLVARLSAQKTSLCNDLGSGTHN------LLSYTNMLHEICPYFKFGYMSANG 207
                5799***************************************************888888777666665......8999999***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aI ea+++e++vHi+Df+i+qG QW++L+qa+a+R++gpp++RiT++ +       +  ++g+rL k+A++++vpfefn  ++ ++++  ++++r++pgE
  Lsa005806 208 AIAEAMKNEKKVHIVDFQIGQGSQWIPLIQAFAARRGGPPRIRITAFTD------SMSVNVGQRLCKLARSFNVPFEFNS-ISISVSKAGVDQFRLRPGE 300
                *************************************************......67889********************.6889*************** PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                alaVn+++ lh++ desvs+e++rd++L++vksl+Pkvv+++eqe+++n+++F  rfleal+yy a+f+s++++lpr ++eri+vE+ +l++++vn++ac
  Lsa005806 301 ALAVNFAFVLHHMADESVSTENHRDRILRVVKSLKPKVVTLIEQESNTNTSPFYPRFLEALDYYNAMFESMDESLPRGHKERINVEQYCLAKDVVNIIAC 400
                **************************************************************************************************** PP

       GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                eg+er+erhe l+kW+ r+++aGF+p+pls+ ++ ++k+ll+k++++ yr+ee++g+l+lgW+dr Lv+ +aW
  Lsa005806 401 EGNERVERHELLGKWKLRFRMAGFNPYPLSSLVNGTIKTLLKKYSDR-YRLEERDGALYLGWMDRDLVASCAW 472
                *********************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.58888454IPR005202Transcription factor GRAS
PfamPF035142.6E-124114472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSNTWYYPSM QEYDVYKPQF QTLDNINHGR SNLFIKPDPY STLESSSADN SCTTMYNSFS  60
PVTEDLVNFK HKLKQLETVM FSDLYEDLVG NGGIELQDME IWKEMVEGVP KRDLKQVLIA  120
CADAISNNDF STAGILISEL REMVSVAGEP IQRLGAYMLE GLVARLSAQK TSLCNDLGSG  180
THNLLSYTNM LHEICPYFKF GYMSANGAIA EAMKNEKKVH IVDFQIGQGS QWIPLIQAFA  240
ARRGGPPRIR ITAFTDSMSV NVGQRLCKLA RSFNVPFEFN SISISVSKAG VDQFRLRPGE  300
ALAVNFAFVL HHMADESVST ENHRDRILRV VKSLKPKVVT LIEQESNTNT SPFYPRFLEA  360
LDYYNAMFES MDESLPRGHK ERINVEQYCL AKDVVNIIAC EGNERVERHE LLGKWKLRFR  420
MAGFNPYPLS SLVNGTIKTL LKKYSDRYRL EERDGALYLG WMDRDLVASC AW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-551164726374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770078.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2J6L0080.0A0A2J6L008_LACSA; Uncharacterized protein
STRINGXP_009605526.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]