PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005793

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRF

Protein Properties

Length: 414aa MW: 44949.6 Da PI: 8.2778

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S32125566	PU_unref	Unigene	View CDS
gnl\|UG\|Lsa#S58678473	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-49052	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.6	6.9e-26	162	205	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Lsa005793 162 DPEPGRCRRTDGKKWRCSRDVVAGHKYCERHIHRGRNRSRKPVE 205 79***************************************987 PP
2	QLQ	38.8	2.8e-14	95	126	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +F+ Q+q+L+ Q+l+y+y++ + P+Pp+Ll Lsa005793 95 YFSVGQWQELEVQALIYRYMLTGSPIPPQLLH 126 68889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.4E-6	94	130	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	15.597	95	130	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.4E-10	96	126	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.386	162	206	IPR014977	WRC domain
Pfam	PF08879	5.9E-22	163	205	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
XKNLLTHTYS KEAAEEAAIY LTVCLNLFLS STLNKYLICL PSPSMDFHLK QWAHQNQHQP 60 DDSSASLALP LFSSEPTSSS SSSKPSKMMQ GVSGYFSVGQ WQELEVQALI YRYMLTGSPI 120 PPQLLHLLLN STSNTNPPFY PLSNFPSLCQ TGGGYWGRGG MDPEPGRCRR TDGKKWRCSR 180 DVVAGHKYCE RHIHRGRNRS RKPVEIPTPT TSTATAGSRG GDVDYGVGLV KKPTSVYTTT 240 AAAAGYGGAQ TYTGSTNCGG SVSGHSPFFD QLHLNQRVDD KAAYRSSENE DKLSGGRILR 300 PFFNDWPRTV QEQETLATSL SISVTGNATS DFSLKLSTGN DETGPRGEEI NGERERASLS 360 WGMQWGTHHA GSLGGPLAEA LRSSSTSNTS SPTSVLHQLQ RGSTTTSETS YVST

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

XKNLLTHTYS KEAAEEAAIY LTVCLNLFLS STLNKYLICL PSPSMDFHLK QWAHQNQHQP  60
DDSSASLALP LFSSEPTSSS SSSKPSKMMQ GVSGYFSVGQ WQELEVQALI YRYMLTGSPI  120
PPQLLHLLLN STSNTNPPFY PLSNFPSLCQ TGGGYWGRGG MDPEPGRCRR TDGKKWRCSR  180
DVVAGHKYCE RHIHRGRNRS RKPVEIPTPT TSTATAGSRG GDVDYGVGLV KKPTSVYTTT  240
AAAAGYGGAQ TYTGSTNCGG SVSGHSPFFD QLHLNQRVDD KAAYRSSENE DKLSGGRILR  300
PFFNDWPRTV QEQETLATSL SISVTGNATS DFSLKLSTGN DETGPRGEEI NGERERASLS  360
WGMQWGTHHA GSLGGPLAEA LRSSSTSNTS SPTSVLHQLQ RGSTTTSETS YVST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023732600.1	0.0	growth-regulating factor 3 isoform X2
TrEMBL	A0A2J6KI80	0.0	A0A2J6KI80_LACSA; Uncharacterized protein
STRING	VIT_08s0007g03760.t01	1e-104	(Vitis vinifera)