PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa005715 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||||||
Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 247aa MW: 28361.6 Da PI: 8.8682 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.2 | 9.1e-23 | 38 | 88 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++ks r vtfskRr+g++KKA LSv Cd++va ++s +gklye++s Lsa005715 38 KRIQDKSSRLVTFSKRRTGLFKKARHLSVICDVDVAAFVISDSGKLYEFCS 88 79***********************************************96 PP | |||||||
2 | K-box | 29.2 | 3.9e-11 | 144 | 199 | 44 | 99 |
K-box 44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ s+ ++ +Le++L+ +l + RskK++l++e +++ ++ ++l ee+++L+++l+ Lsa005715 144 NEVSVSDMTKLEEELHAALLHTRSKKTQLMVERMSTFHEQVRKLTEEKEELKQQLQ 199 78899************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-31 | 30 | 89 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.16E-25 | 30 | 105 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.165 | 30 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-21 | 32 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-21 | 39 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-21 | 52 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-21 | 67 | 88 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.503 | 111 | 204 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.3E-8 | 141 | 198 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
XGGFCERAGD QKLELRVRRL IHPSAGREKM GRRKLEIKRI QDKSSRLVTF SKRRTGLFKK 60 ARHLSVICDV DVAAFVISDS GKLYEFCSGG YNSNSVELIL SRYQAEERTT QEGAFEDMAF 120 NKSTRFRTCK ELLKSVRRVD EQPNEVSVSD MTKLEEELHA ALLHTRSKKT QLMVERMSTF 180 HEQVRKLTEE KEELKQQLQV ASAKKNQKDD VDDDGGEGLD HSANSHSYYQ TNLYPPQPLL 240 TLPLXQE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-13 | 30 | 88 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 1e-13 | 30 | 88 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 1e-13 | 30 | 88 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 1e-13 | 30 | 88 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 9e-14 | 30 | 88 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 9e-14 | 30 | 88 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 9e-14 | 30 | 88 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 9e-14 | 30 | 88 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023732397.1 | 1e-159 | agamous-like MADS-box protein AGL27 isoform X1 | ||||
TrEMBL | A0A2J6MCW0 | 1e-157 | A0A2J6MCW0_LACSA; Uncharacterized protein |