PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005488
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 296aa    MW: 33172.2 Da    PI: 9.3633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684039PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1899149256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Lsa005488  99 LYRGVRQRH-WGKWVAEIRLPQN---RMRIWLGTYETAETAAYAYDRAAYKLRGE 149
                59******9.**********954...59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.61E-2298158No hitNo description
SMARTSM003801.4E-3599162IPR001471AP2/ERF domain
PROSITE profilePS5103222.93299156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-3199157IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2299156IPR016177DNA-binding domain
PRINTSPR003675.6E-10100111IPR001471AP2/ERF domain
PfamPF008472.1E-12100149IPR001471AP2/ERF domain
PRINTSPR003675.6E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQQNSQYNDI GSSLSNLILS GGNGSNTLDS IFTHCSSSVP SNSIHRPLGS SVYLKQRDLL  60
HKFSEQNFGK KSLSNLSTTT PIGYPRCLDY SINPYKKKLY RGVRQRHWGK WVAEIRLPQN  120
RMRIWLGTYE TAETAAYAYD RAAYKLRGEY ARLNFPNVQD PSQLGLIGDG QRLNALKSAV  180
DAKIQAICQK LRREKANRKK NKNKNKKKSE SEDDEREREK IIKIEYSSSI SCVGDELMSS  240
TSMSEDGFWK GESSQCSGSG ESKVVAVGGG ESEFEGCSLA RLPSYDPDLI WEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2198156160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746139.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W22e-61ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2J6JNV80.0A0A2J6JNV8_LACSA; Uncharacterized protein
STRINGXP_006439361.11e-94(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]