PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005410
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 304aa    MW: 34960.7 Da    PI: 4.2936
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58676157PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS86.73.9e-271222842180
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++ Aea+  ++  la+ + + +se ++p+g++++Rla          l+      ++  + +  ++++  +  +a++ f+e++P+ +f+h+taN+a
  Lsa005410 122 QNLLTAYAEAIGLQQRDLAEVIQKCISEKVNPNGQTLERLALN--------LFP-----CSENEKEYLKQESIRNFKTAFRGFYEIFPYGRFAHFTANSA 208
                67999**********************************9754........343.....12222333333446778889999****************** PP

       GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                Ileav ++ + v i+Dfd+++G QWp  +q +a+R++   sl iT v+  e +++   eet+  L ++A ++g++++ + 
  Lsa005410 209 ILEAVPNHvDSVQIVDFDMGEGSQWPVVIQVMAQRRK---SLTITSVKL-EDDNSGLFEETKMHLLNYAGSFGLNLKVEE 284
                *******99**************************66...5*******9.66789999****************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.44695304IPR005202Transcription factor GRAS
PfamPF035141.3E-24122284IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
XFFLIALDHY RNKNMMQSEL LIQPSWPNQS YFHSVLDQDV LNHEHSSLIS SLYMNEFLDY  60
DHMEGLDDVC SWLCDDDQKM ESEIPTDKST ENSYIWSPTI SMTSSESHDS EAMEMESETG  120
IQNLLTAYAE AIGLQQRDLA EVIQKCISEK VNPNGQTLER LALNLFPCSE NEKEYLKQES  180
IRNFKTAFRG FYEIFPYGRF AHFTANSAIL EAVPNHVDSV QIVDFDMGEG SQWPVVIQVM  240
AQRRKSLTIT SVKLEDDNSG LFEETKMHLL NYAGSFGLNL KVEEKELGQI VNRNEFMAFN  300
CMLX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758270.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2J6LQI30.0A0A2J6LQI3_LACSA; Uncharacterized protein