PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005154
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27554.4 Da    PI: 9.3799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32126078PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.65.2e-21944136
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaeva 36
               krienk+ rqvtfskRr g+lKKA+E+SvLCda+va
  Lsa005154  9 KRIENKIYRQVTFSKRRSGLLKKAHEISVLCDADVA 44
               79********************************97 PP
2bZIP_121.16.7e-071391862063
                HHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  20 sRqRKka....eieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 R+RK +    +i eL++k keL+ +N +L k+++el+k ++++++++
  Lsa005154 139 VRLRKNQlmleSISELQKKGKELQDQNNTLSKQIKELEKDIPSHQQQN 186
                688886522226799******************************998 PP
3K-box107.41.6e-35771743100
      K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                + + + + + ++ s++ e+akLk++ie Lq++qRh++GedL+sLslkeLq+LeqqL+++lk++R +Kn+l+le+i+elqkk kelq++n++L+k+++e
  Lsa005154  77 EMQANTTPNVTQGSWSLEHAKLKARIELLQKTQRHFMGEDLDSLSLKELQNLEQQLDTALKHVRLRKNQLMLESISELQKKGKELQDQNNTLSKQIKE 174
                56666677778899*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.11E-20180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.899144IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-25156IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-171044IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-162338IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2987172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.94688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGRVTLKR IENKIYRQVT FSKRRSGLLK KAHEISVLCD ADVASSSSLL KESSASTLLI  60
PEWKGSLERY ERYSYAEMQA NTTPNVTQGS WSLEHAKLKA RIELLQKTQR HFMGEDLDSL  120
SLKELQNLEQ QLDTALKHVR LRKNQLMLES ISELQKKGKE LQDQNNTLSK QIKELEKDIP  180
SHQQQNNETM PSFQFNIFNN PNICEQPRME GDAEENLRQA QMATVTVMPP WMIQHMNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-15941682397Developmental protein SEPALLATA 3
4ox0_B2e-15941682397Developmental protein SEPALLATA 3
4ox0_C2e-15941682397Developmental protein SEPALLATA 3
4ox0_D2e-15941682397Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023764284.11e-151truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ424298e-81AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2J6LCT81e-150A0A2J6LCT8_LACSA; Uncharacterized protein
STRINGSolyc03g114830.2.17e-89(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]