PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa004808 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bZIP | ||||||||
Protein Properties | Length: 340aa MW: 36432 Da PI: 5.7434 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 81 | 1.4e-25 | 254 | 316 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN++L++el++l++e++kl+se+ Lsa004808 254 ERELKRQKRKQSNRESARRSRLRKQAECEELQTRVEALTSENHTLRDELQRLSEECQKLTSEN 316 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.1E-27 | 1 | 92 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 2.5E-21 | 250 | 313 | No hit | No description |
SMART | SM00338 | 3.6E-24 | 254 | 318 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.9E-23 | 254 | 316 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.484 | 256 | 319 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.0E-12 | 257 | 313 | No hit | No description |
CDD | cd14702 | 3.65E-26 | 259 | 310 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 261 | 276 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGAGEDNSPA KHSKPAPTQE TPPPSYADWS NSMQAYYGAG GTPPFFASTV ASPTPHPYMW 60 GGQHPMMSPY GTPVPYPALY PPAGVYAHPN MPMTPTTAPP NTEMEAKAYE GKERSTTTNK 120 KSKGISGNGN VGVRTGESGK AASSSGNDGG ATQSADSGSD GSSDGSDEND QNEFSGGKKG 180 SFNQMLADAN AQNNNIQTPV PGNPVASIPG TNLNMGMDLW NPAAGNTAIK MRPGVSRGVV 240 PPPMMPDQWV QQDERELKRQ KRKQSNRESA RRSRLRKQAE CEELQTRVEA LTSENHTLRD 300 ELQRLSEECQ KLTSENNSIK DELTRFCGPE AVSKLDEGNS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 276 | RRSRLRK |
2 | 270 | 277 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023770732.1 | 0.0 | G-box-binding factor 1-like isoform X1 | ||||
Swissprot | P42774 | 1e-110 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A2J6KYJ1 | 0.0 | A0A2J6KYJ1_LACSA; Uncharacterized protein | ||||
STRING | XP_004143501.1 | 1e-154 | (Cucumis sativus) | ||||
STRING | XP_004172454.1 | 1e-154 | (Cucumis sativus) |