PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004805
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 284aa    MW: 32593.8 Da    PI: 7.6017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682883PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-18731PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-09168191327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                t++C++f++ G+Ck+G++CkF H++
  Lsa004805 168 TKICHYFSK-GHCKHGNKCKFLHSQ 191
                789******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.319166192IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019167191IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7168191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6168190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7168192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5164410.191212284IPR025605OST-HTH/LOTUS domain
PfamPF128729.9E-10212282IPR025605OST-HTH/LOTUS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEAFEAAKIV YNRILETESE TITRKIIGYI YLLDHADREM IRLAYCPDNL IQNLIQKAKI  60
ELNLLAKPPP SPPISPSLQF SPILHSHRPF SAPPNLQIPS PTPNWDSPFH YPNMVLDDCR  120
YQNQNHDNFI GLGEQFEPFN REITSFTESC YSPDGNFSVR GRRDVIPTKI CHYFSKGHCK  180
HGNKCKFLHS QSLHDFNNEL MGDDQASFSP GSLEKLEFEI TEILKSRRGN PISIASLPMI  240
YYERYGRTLQ AEGYLTESQR HGKAGYSLTK LLARLKNSIR LIDX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766348.10.0zinc finger CCCH domain-containing protein 18-like isoform X1
RefseqXP_023766349.10.0zinc finger CCCH domain-containing protein 18-like isoform X2
TrEMBLA0A2J6L8C60.0A0A2J6L8C6_LACSA; Uncharacterized protein
STRINGXP_010270169.17e-90(Nelumbo nucifera)