PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004584
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 318aa    MW: 35173.5 Da    PI: 6.9194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686258PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14135181354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Lsa004584 135 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 181
                79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-12135181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-15136191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14136190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-5145184No hitNo description
CDDcd048737.18E-7218283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGINDYSYTA SSEVSPILHS QQQPWILPQV FQHHNSSYTP DLTYPSGDHG TYLFPPPPPP  60
PPSSYGGLIH RRVPSGLQFA YEGSTSASSD HHLRLISETL GQMVQPGSMP FGLQAEMGKM  120
TSQEIMDAKA LAASKSHSEA ERRRRERINN HLAKLRSLLP STTKTDKASL LAEVIQHVKE  180
LKRQTSIIAE QSPVPTETDE LTIDNTSDED GNIVIRASLC CDDRSDLLPD LIKTLKALRL  240
RTLKAEITTL GGRVKNVLFI TGDQDSTNNN DTVNYSIGMI QEAFKAVMEK TNGDHESSSG  300
SVKRQRTNNI NVLDPRRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756084.10.0transcription factor bHLH30-like
RefseqXP_023756085.10.0transcription factor bHLH30-like
SwissprotQ9S7Y11e-106BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2J6LVC50.0A0A2J6LVC5_LACSA; Uncharacterized protein
STRINGPOPTR_0008s11490.11e-132(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]