PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004485
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 228aa    MW: 25104.4 Da    PI: 5.3515
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-5769PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-213282155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  Lsa004485 32 PRYRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDSAEDAARAYDAAARSLRG 82
               68********.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.85E-203292No hitNo description
PfamPF008471.1E-133282IPR001471AP2/ERF domain
PROSITE profilePS5103223.7623390IPR001471AP2/ERF domain
SMARTSM003809.3E-373396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-323391IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-223392IPR016177DNA-binding domain
PRINTSPR003671.3E-103445IPR001471AP2/ERF domain
PRINTSPR003671.3E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MARGSRAKAA AAGEAIGSRQ MVGTQQQEDN EPRYRGVRKR PWGRFAAEIR DPWKKARVWL  60
GTFDSAEDAA RAYDAAARSL RGPKAKTNFP VSDETAEHVT DDQHHQRGFY EFQDFNNQSR  120
PTTSNLSSTV ESTSGPRPSN PPRVRTHQRL KPPAAPPHDD DDCHSNCDSS SSVVDGYYCD  180
ADLSSSSRKP LPFDLNLPPP LDDIGFSSNP IDEADADADD LFVTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-213497670ATERF1
3gcc_A3e-213497670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731105.11e-168ethylene-responsive transcription factor 3-like
SwissprotO803391e-38ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A2J6KLM41e-167A0A2J6KLM4_LACSA; Uncharacterized protein
STRINGXP_004513889.14e-54(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-29ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]