PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa004479
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 1516aa    MW: 167873 Da    PI: 5.6611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-37389PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.7e-0614901512225
                 -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH    2 ktelCrffartGtCkyGdrCkFaH 25  
                 ++++C+ f+++G Ck G++C++ H
  Lsa004479 1490 GQRICK-FYESGRCKKGSSCSYLH 1512
                 6899**.8899************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.99E-863126IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-866135IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155685.93E-1981126No hitNo description
SMARTSM002499.1E-781127IPR001965Zinc finger, PHD-type
Gene3DG3DSA:1.10.245.103.8E-26278370IPR003121SWIB/MDM2 domain
SuperFamilySSF475928.28E-21282363IPR003121SWIB/MDM2 domain
PfamPF022019.3E-15297362IPR003121SWIB/MDM2 domain
SMARTSM001510.0039306368IPR019835SWIB domain
SMARTSM007196.1E-37422532IPR004343Plus-3 domain
PROSITE profilePS5136023.827422555IPR004343Plus-3 domain
SuperFamilySSF1590424.71E-29423553IPR004343Plus-3 domain
PfamPF031261.5E-20427530IPR004343Plus-3 domain
SuperFamilySSF552775.89E-16857916IPR003169GYF domain
PROSITE profilePS5082914.857864916IPR003169GYF domain
CDDcd000729.67E-17864919No hitNo description
SMARTSM004442.6E-11865920IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.6E-17866919IPR003169GYF domain
PfamPF022131.1E-10866905IPR003169GYF domain
SuperFamilySSF902292.22E-614881513IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.63814881515IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-414881514IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-514921515IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1516 aa     Download sequence    Send to blast
MEVQNSGAES QSLDRSQAIQ KTDGGQVGVV ADGGGGGVKV EVGNAVGGAQ VAKRKRGRPP  60
RAQANQPSAK KIKEEDEDED VCFICFDGGS LVLCDRRGCP KAYHPACIKR DEAFFQTKAK  120
WNCGWHICSV CEKTSYHMCY TCTYSLCKGC SKKADFMCVR GDKGFCSICM KTITLIENSA  180
QGKEVKVDFD DKTSWEYLFK VYWNYLKGKL SLTFSEIIAA QSPWERSETI PSIESTSHIS  240
ASGRRSITLD TSFGNHEANN ISKSSKTSEQ TNEPTKETPS VIESKEWATK ELLDFVSHMK  300
NGDVSMLSQF DVQALLLDYI KRNNLRDPRK KTQIICDTRL KNLFGKPRVG HIEMLKLLEL  360
HFYIKEDDSS QKNTIENNTV SVKQVDADCK PDNMVMVSNK ERRSHRKAEQ RVTQNKLDEY  420
ASIDVHNMNL IYLRRNLMEK IFEDSEKFHE KVVGSIVQIR ISGSDQKDDM YRLVQVVGTT  480
KADVPYKVGD KLVDVMLEVS NLDKKETVAI DTISNQELSE DECRRLRESI RCGLVRCFTV  540
GEIQEKAMAL QSLLVDDRME AEMLRLNHLR DRASEKRQKK GLRECVQKLQ LLKTPEERER  600
RLREVPEVHT DPKMNPDYES DDTEEYFNNE HGEHQKPKFS WVSGTNTISP QKRAESSNDQ  660
NQPKDNVEED SIKPTGTSEM EKDMMESNPP VEPPKEVNCN GSTIPESNPE PHVSSSLPTI  720
VVPEFKIETP ARSSVPTIVV PESNIETPVR SSVPTIVVSE SKIETPVTSS LPTIVVPESK  780
IETPVTSSLP TIAPESKIET PVRSSVPAIV VLESKIETPV RSSVPTIVSE SKIETRVSSS  840
LPTIEPESTP SSFLSMLEIP SPNDDIWHYR DPSGNVQGPF SMVQLHQWSI RGYFPNDMRV  900
WAGREADSVL LNDVLQQQFN NPYNDPWPGN EKVNNQIEEV NVPQTSYAMD SVNLEKLPNS  960
DDNNYNLNCN PPNMSISSPS PSPSPSPSPK GPDTDINQHV SQVFPVADEA LVDLQSQLLK  1020
KESHENEKDK QQSAQPSGNP NPNPNPTPNP PTWSTALSLV IGGAQLPETG DEWGRYPPKP  1080
EEWGSARVSV SPLKPLEVLD HQVGSTNMDQ IMHHHSSPPQ SSQPYHGLPA WHGLGVGETI  1140
EFATLAEESV SDLLAEVDAM ESRNGVPSPT SRRNSFLEDL FNGSMDDFSP TDQDTDMHLH  1200
RQSHHFSFGL ETKPIGAVAI PATNSDHMGF KWAEMGSSEL PPPPPPQPPP PRQDMIDLND  1260
STRAETDEGE RDDLVEEKSR NGILPLPPPP PPPLSPPPPP PESRGGRKSK GVVSGWPGER  1320
IKAVAARKFS GFPDVEEEEG EFIQPDAPPP PPPPPQPQSQ PPLLPLPLPL TMGFDVADSR  1380
RMGSEKYTGR ASQGATSGSR SSHSRSVNAG RESSSHHRRS SGGDRYSNST SNNNSISKSI  1440
SPRERTHHGE DSGHGRSSSR ASWGRQSSFS SGGSGGGGAG GYSRAPPSKG QRICKFYESG  1500
RCKKGSSCSY LHQQER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A2e-1477148472Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023764832.10.0zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A2J6LBF70.0A0A2J6LBF7_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding