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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lsa004226 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 280aa MW: 30848.7 Da PI: 9.3529 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 109.6 | 1.7e-34 | 45 | 101 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
v+YkeClkNhAas+Ggha+DGCgEfmps++ + +++++lkCaACgCHRnFHRre+
Lsa004226 45 VVVYKECLKNHAASIGGHALDGCGEFMPSPTCTpTDPKSLKCAACGCHRNFHRREPI 101
689****************************999********************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04770 | 4.3E-29 | 46 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| ProDom | PD125774 | 2.0E-23 | 46 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 8.5E-32 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 27.014 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| SuperFamily | SSF46689 | 3.29E-16 | 161 | 234 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 162 | 234 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01565 | 2.0E-24 | 173 | 230 | IPR006455 | Homeodomain, ZF-HD class |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 280 aa Download sequence Send to blast |
MDLKHPTTTI PEPESDTPPR SQSIKKLLSF QNGKPHHHHP PPSTVVVYKE CLKNHAASIG 60 GHALDGCGEF MPSPTCTPTD PKSLKCAACG CHRNFHRREP INDFPATVTR NHFIDFNRPY 120 QTSTSTSTSP TPPSPPPQPT NYAFGGHLLL SLSTAADQTH TTATPMAIKT SGRKRFRTKF 180 SLDQKEKMTI FAEKLGWKMQ RCDDKLIADF CNEIGIRRGI FKVWMHNNKN NFGKREKDIT 240 TTAITGVAAA VVRSNDSTHQ DNGSDDVHLQ ASTNGSSSSS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wh7_A | 6e-21 | 174 | 231 | 18 | 75 | ZF-HD homeobox family protein |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023731362.1 | 0.0 | zinc-finger homeodomain protein 9-like | ||||
| TrEMBL | A0A2J6KL33 | 0.0 | A0A2J6KL33_LACSA; Uncharacterized protein | ||||
| STRING | XP_010257380.1 | 2e-77 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G15210.1 | 8e-59 | homeobox protein 30 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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