PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004020

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 325aa MW: 35930.2 Da PI: 10.1268

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58691620	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46	1.1e-14	255	297	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+k+ Le+eN++Lk Lsa004020 255 RRQKRMIKNRESAARSRARKQAYTHELENKISRLEEENERLKR 297 79*************************************9995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-13	249	298	No hit	No description
SMART	SM00338	2.4E-13	251	323	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.519	253	298	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.0E-12	255	298	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-10	255	299	No hit	No description
CDD	cd14707	1.07E-23	255	300	No hit	No description
PROSITE pattern	PS00036	0	258	273	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGSNGRRGEP QLPKPDGLAR QGSSYNLTLD EAQQQLGDLG KPLSSMNLDE LLKSVWTAEA 60 NQGMMTLTGG QADYTHHGVG QGQPSSLARQ SSLTLSHDQR MRTVDEVWQD IQQGHKSKSN 120 NNNADKKGSR ERRPTLGEMT LEDFLVKAGI VAGSSPGKKN TGGGGSVIGG VDSNVGHGHQ 180 QAQWMQQYQV APIPQHVYMT GHHPVQQSLP MMEMGYPETQ MAISPSHLMH NLSDTQTPGR 240 KRVASGDVME KTVERRQKRM IKNRESAARS RARKQAYTHE LENKISRLEE ENERLKRQKE 300 AGNVIPSAPP PEPKYQLRRT SSAPF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023768520.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	5e-97	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2J6L3H7	0.0	A0A2J6L3H7_LACSA; Uncharacterized protein
STRING	XP_009614068.1	1e-120	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	9e-90	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]