PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003913

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 495aa MW: 55127.5 Da PI: 5.3727

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58690277	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-770	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.1	8.1e-54	4	134	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lp GfrF+Ptdeel+++yL++k++g++ e+ ++i+evd++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++++ Lsa003913 4 LPLGFRFRPTDEELINYYLRQKINGHHSEV-HIIPEVDVCKLEPWDLPdQsVIKTDDPEWFFFCPRDRKYPNGHRSNRATNAGYWKATGKDRTIKTRgrs 102 699**********************999.89**********96447777888**********************************9766 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 + + +g+kktLvfy+grapkge+t+W+mheyr Lsa003913 103 DAKIIGMKKTLVFYRGRAPKGERTHWIMHEYR 134 6677*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-60	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	58.684	4	158	IPR003441	NAC domain
Pfam	PF02365	2.0E-28	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MEALPLGFRF RPTDEELINY YLRQKINGHH SEVHIIPEVD VCKLEPWDLP DQSVIKTDDP 60 EWFFFCPRDR KYPNGHRSNR ATNAGYWKAT GKDRTIKTRG RSDAKIIGMK KTLVFYRGRA 120 PKGERTHWIM HEYRPTEKDL DGTNPGQVAY VLCRLFRKSE EIMDPSKYDE PEPSSLSPTP 180 HKSSPENASF DFLQPPSPLD LQTNGIEPVC FESRVADVDK IPEIGAYLDS RFANDFGSDD 240 NGLGFQDGTC EPDVSLSELL SLLQKGSESS FKDPCSLKNE EMGSETFMSG PFQTSHHIFP 300 VNSHMIDNGY DLPQKQILMP PRSSESTSGT NASGSGSGSG QTGRPDIKIR TRQSQTDPNP 360 EHVMGQGTAS RRIRLQIDSS SGSSSHGDSC SNDHENEEET SSSVSEVCDT GEDTGITSNA 420 YKTDQGEDER LRSKKKQEGG VSVISNIQIQ PLILVKAYCG GHFLRSSLFK IISVFLVIFL 480 MVISLGVAEC PIFLL

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MEALPLGFRF RPTDEELINY YLRQKINGHH SEVHIIPEVD VCKLEPWDLP DQSVIKTDDP  60
EWFFFCPRDR KYPNGHRSNR ATNAGYWKAT GKDRTIKTRG RSDAKIIGMK KTLVFYRGRA  120
PKGERTHWIM HEYRPTEKDL DGTNPGQVAY VLCRLFRKSE EIMDPSKYDE PEPSSLSPTP  180
HKSSPENASF DFLQPPSPLD LQTNGIEPVC FESRVADVDK IPEIGAYLDS RFANDFGSDD  240
NGLGFQDGTC EPDVSLSELL SLLQKGSESS FKDPCSLKNE EMGSETFMSG PFQTSHHIFP  300
VNSHMIDNGY DLPQKQILMP PRSSESTSGT NASGSGSGSG QTGRPDIKIR TRQSQTDPNP  360
EHVMGQGTAS RRIRLQIDSS SGSSSHGDSC SNDHENEEET SSSVSEVCDT GEDTGITSNA  420
YKTDQGEDER LRSKKKQEGG VSVISNIQIQ PLILVKAYCG GHFLRSSLFK IISVFLVIFL  480
MVISLGVAEC PIFLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-47	3	158	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-47	3	158	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-47	3	158	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-47	3	158	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-47	3	158	19	168	NAC domain-containing protein 19
3swm_B	4e-47	3	158	19	168	NAC domain-containing protein 19
3swm_C	4e-47	3	158	19	168	NAC domain-containing protein 19
3swm_D	4e-47	3	158	19	168	NAC domain-containing protein 19
3swp_A	4e-47	3	158	19	168	NAC domain-containing protein 19
3swp_B	4e-47	3	158	19	168	NAC domain-containing protein 19
3swp_C	4e-47	3	158	19	168	NAC domain-containing protein 19
3swp_D	4e-47	3	158	19	168	NAC domain-containing protein 19
4dul_A	4e-47	3	158	16	165	NAC domain-containing protein 19
4dul_B	4e-47	3	158	16	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023742396.1	0.0	protein NTM1-like 9
Swissprot	F4JN35	1e-105	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A2J6JWQ3	0.0	A0A2J6JWQ3_LACSA; Uncharacterized protein
STRING	XP_010056056.1	1e-120	(Eucalyptus grandis)

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]