PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003891
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 340aa    MW: 37936.7 Da    PI: 6.9488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-24082PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13137188155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h  +Er+RR+++N+ ++ +r+++P++   ++++ + a+i+  A++++k+L+
  Lsa003891 137 QRMTHITVERNRRKQMNEYLAVIRSMMPSS---YAQRGDQASIVAGAINFVKQLE 188
                79****************************...********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.35E-11135192No hitNo description
SuperFamilySSF474596.94E-16135209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-13136192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.265136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-7142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALETIVYSQ GQIGNVGYNY VFQEDHIFGG FLEGTNHTNH HQESASVHEY WGDYSSSSSA  60
MHIKDQWDPK SSPDDCTGGG ECDRYFLGEL FLPDNHRDMR LESSPTATVA TTTATAAGRR  120
KRRRTKSGKN KEDIENQRMT HITVERNRRK QMNEYLAVIR SMMPSSYAQR GDQASIVAGA  180
INFVKQLEHQ VQTLEIKKSA NLHGYSPPLQ PFKEFFTFPQ YSTGRAIYDD GGGGGGGGSA  240
TKTKNRPPAM AEIEVAMVES HANLKILSKK RKTQLLKMVA GLQCLWLSIL HLNVTTVEQM  300
VLYTLSVKLE DGCQLSTVDE IADAVNFLLC RIEEESLCSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123RKRRR
2119124RKRRRT
3137148RMTHITVERNRR
4263271LKILSKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760483.10.0transcription factor bHLH96-like
TrEMBLA0A2J6LKY50.0A0A2J6LKY5_LACSA; Uncharacterized protein
STRINGXP_010272971.13e-94(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-75bHLH family protein