PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa003879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24246.3 Da PI: 5.2293 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72 | 5.1e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks r vtfskRr+g++ KA LS LCd++vavi+fs +gklye+++ Lsa003879 9 KRIEDKSSRLVTFSKRRTGLIEKARQLSGLCDVDVAVIVFSARGKLYEFCN 59 79***********************************************95 PP | |||||||
2 | K-box | 32.5 | 3.7e-12 | 118 | 171 | 44 | 97 |
K-box 44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e+Ls+ e+ qLe++L+++l + Rs+K++l++e +++lq++ek+l +e++++ ++ Lsa003879 118 EELSVVEMTQLEEELDTALMQTRSRKTQLMMEYVSTLQQQEKDLIKEKEEIIQQ 171 689*****************************************9999988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.614 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-25 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.03E-32 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.603 | 86 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.2E-8 | 118 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGRRKLEIKR IEDKSSRLVT FSKRRTGLIE KARQLSGLCD VDVAVIVFSA RGKLYEFCNG 60 RTANSVEHIL ARYEAENRSM KVDGQDSELP LKCTKFKTCK ELLQMVDRLV EENNSNNEEL 120 SVVEMTQLEE ELDTALMQTR SRKTQLMMEY VSTLQQQEKD LIKEKEEIIQ QNASAENVFG 180 IGGGGGGXGR NDDLSVNQMD SPQHLTLPLF IPNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-14 | 1 | 77 | 1 | 73 | MEF2C |
5f28_B | 2e-14 | 1 | 77 | 1 | 73 | MEF2C |
5f28_C | 2e-14 | 1 | 77 | 1 | 73 | MEF2C |
5f28_D | 2e-14 | 1 | 77 | 1 | 73 | MEF2C |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023740659.1 | 1e-153 | agamous-like MADS-box protein AGL27 | ||||
TrEMBL | A0A2J6JY13 | 1e-105 | A0A2J6JY13_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10140.2 | 2e-35 | MIKC_MADS family protein |