PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa003869 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRF | ||||||||
Protein Properties | Length: 153aa MW: 17032.1 Da PI: 8.6072 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.5 | 1.4e-24 | 95 | 139 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +aepgrC+RtDGKkWRCs++v+ g+k+CE+Hlhrgrsrsrk +e+ Lsa003869 95 EAEPGRCKRTDGKKWRCSKEVVIGYKYCEKHLHRGRSRSRKDVEA 139 58***************************************9986 PP | |||||||
2 | QLQ | 48 | 3.9e-17 | 40 | 71 | 6 | 37 |
QLQ 6 aQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Q ++Lk Q+l+yKy+ a++PvP++Ll++i++ Lsa003869 40 MQMEELKLQALIYKYMEAGLPVPSNLLLPIWN 71 7******************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51666 | 17.216 | 36 | 71 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.4E-11 | 40 | 70 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
SMART | SM00951 | 4.2E-4 | 41 | 71 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.519 | 95 | 139 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.5E-21 | 96 | 138 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MNGVEGSSSS AADSSSFLEQ NANYMSVLGM NGGTVVHHXM QMEELKLQAL IYKYMEAGLP 60 VPSNLLLPIW NSVLASFTGS GCDRSLYDNY KNSMEAEPGR CKRTDGKKWR CSKEVVIGYK 120 YCEKHLHRGR SRSRKDVEAD SMVAATDGRH KNL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023750571.1 | 7e-98 | growth-regulating factor 12-like | ||||
Swissprot | Q6AWX7 | 1e-41 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A2J6M7F0 | 2e-96 | A0A2J6M7F0_LACSA; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P21590_001 | 5e-42 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 3e-33 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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