PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003827
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 300aa    MW: 33637.1 Da    PI: 5.9294
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687539PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-14430PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.9e-11169214550
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                kr +r   NR +A+rsR RK+ +i eLe+ v +L++e ++L  ++ 
  Lsa003827 169 KRVKRILANRQSAQRSRVRKLHYISELERSVTTLQTEVSTLSPRVA 214
                8999*********************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-13165229IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.542167219IPR004827Basic-leucine zipper domain
PfamPF001705.0E-10169213IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.17E-11169223No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-13169220No hitNo description
CDDcd147034.97E-23170220No hitNo description
PROSITE patternPS000360172187IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAQKWPSFSY QTMQPMMPMS ASQPPSWMDD FLDFSSARRN AHRRSASDPI AFVETPFINE  60
CRNSNSNDPS MIPCSNNNGF ERLDDEQLSS MFSDDVAANL HSTRSSSSPS EQNSDNDERR  120
PSPPQEQPPS QLKSEPGEVE DGGGYEHDSD SGKLPFTFSS DGGTIVDPKR VKRILANRQS  180
AQRSRVRKLH YISELERSVT TLQTEVSTLS PRVAFLDHQR LILNVDNSSL KQRIAALAQD  240
KIFKDAHQEA LKKEIERLRR VYHEQNMNNN NKTENITTGS PALMVSPPPP AASVSGTDER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768311.10.0basic leucine zipper 34-like
SwissprotQ9M2K47e-83BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A2J6L3V80.0A0A2J6L3V8_LACSA; Uncharacterized protein
STRINGXP_010260405.11e-105(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.23e-64bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]