PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003747
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 264aa    MW: 27057.3 Da    PI: 8.9849
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-23314PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-085883227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               k +lC+ f     C++Gd+C+FaHg+
  Lsa003747 58 KSRLCNKFNTAEGCRFGDKCHFAHGE 83
               679*********************96 PP
2zf-CCCH37.34.7e-12231255126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC +fa+ GtC +G+rC+FaHg
  Lsa003747 231 FKTKLCENFAK-GTCTFGERCHFAHG 255
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.38118IPR000571Zinc finger, CCCH-type
PfamPF146082.7515No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-135488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-85587IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2355684IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-55883IPR000571Zinc finger, CCCH-type
SMARTSM003560.0125883IPR000571Zinc finger, CCCH-type
SMARTSM003223.3E-12130200IPR004087K Homology domain
PROSITE profilePS5008414.34131195IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.3E-15131199IPR004088K Homology domain, type 1
SuperFamilySSF547919.65E-16133223IPR004088K Homology domain, type 1
PfamPF000138.3E-11133197IPR004088K Homology domain, type 1
CDDcd001051.66E-13135195No hitNo description
SuperFamilySSF902298.11E-9230260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.84230257IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7230256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-15230260IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9231255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
STSGCPFGEG CHFLHYVPGG LKAVNQMTGG NHPALPPTNR PPVLPPSFPD GSSPPAVKSR  60
LCNKFNTAEG CRFGDKCHFA HGEWELGKPT APSHHEDPRA MARFGGGGGG GGRSDFNPAA  120
NTAAAASFGA SATAKISVNA SLAGAIIGKS GVNSKQISRL TGAKLSIRDH ESDPNLRNIE  180
LEGTFDQIKH ASQMVRELIV NISSASGPLP PQKGFGKAAG GGGGGGPAGN FKTKLCENFA  240
KGTCTFGERC HFAHGAEELR SSGA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742152.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R03e-95C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2J6JXI40.0A0A2J6JXI4_LACSA; Uncharacterized protein
STRINGcassava4.1_012715m1e-124(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-47C3H family protein