PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa003619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | B3 | ||||||||
Protein Properties | Length: 503aa MW: 55170.3 Da PI: 6.717 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.7 | 1.5e-30 | 125 | 227 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 f+kv tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g + +l++ Lsa003619 125 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSTNDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGGsAKDRLFI 224 89***************************9555568889************************************************5434446666776 PP EEE CS B3 95 kvf 97 ++ Lsa003619 225 DWR 227 666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-42 | 120 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.55E-30 | 122 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.48E-27 | 123 | 212 | No hit | No description |
PROSITE profile | PS50863 | 14.254 | 125 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-22 | 125 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-28 | 125 | 228 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
XGGGGGGGNL FEEEDEEERQ NTAPAGQLFP SSSSSSPSSS HHQHQHQHQP PPSFLHQPPY 60 HHQNQRGGWV FDGTSSRPSD PMVMDYSSVA QPAPDNINDD DQQSSHQAAA GGGGMMMVVE 120 REHMFDKVVT PSDVGKLNRL VIPKQHAERY FPLDSSTNDK GLLLNFEDRN GKPWRFRYSY 180 WNSSQSYVMT KGWSRFVKDK KLDAGDIVSF QRGVGGSAKD RLFIDWRHRP DAQAPPYQLS 240 SNLSFPLPHH QFSFHNRNTA GVSWNPLFFQ SQPAPPRSHS NLMLQPPNSY AAPPNSYRYG 300 SSGGSPYHNI GTGSVVNVNQ GGSGSSVIYF RSGAGGIPHQ QHADMMQMQQ RSGVGVGVGI 360 GIDPPALPGP APGVVFESVP VVHGKAAAKR LRLFGVNMDC PISDDDEQDY DQLPGELISP 420 TTNSIPMGHY NHGDYHHEHY PTHHNPPPPP SSSSSTIPYL QLRPNYGEET QFHQTTMVSS 480 SSVDAFNKST KSSSSHMSLD LDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-65 | 118 | 230 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-65 | 118 | 230 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023770567.1 | 0.0 | B3 domain-containing protein Os03g0120900-like | ||||
TrEMBL | A0A2J6MEK3 | 0.0 | A0A2J6MEK3_LACSA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400031863 | 2e-97 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 3e-66 | B3 family protein |