PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa003471

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Nin-like

Protein Properties

Length: 568aa MW: 62149.4 Da PI: 6.9388

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58692468	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.5	6.2e-29	272	323	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l+++F++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Lsa003471 272 AEKSISLEVLQQHFAGSLKDAAKNLGVCPTTMKRICRQHGISRWPSRKINKV 323 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.257	262	343	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-26	276	323	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.35E-22	469	559	No hit	No description
SMART	SM00666	3.4E-23	474	556	IPR000270	PB1 domain
Pfam	PF00564	1.7E-17	474	555	IPR000270	PB1 domain
PROSITE profile	PS51745	23.482	474	556	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.3E-25	474	555	No hit	No description
CDD	cd06407	1.29E-34	475	555	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
XVFPLTQICN ESRQQALAEI LEILAVVCET HNFPLAQTWV PCRHRSVLAY GGGFKKSCSS 60 FDGSCMGQVC MSTTDVAFYV VDAHMWGFRE ACAEHHLQKG QGVAGRAFAT RSSCFCENIT 120 HFGKTEYPLV HYARMFGLVG SFAICLRSSH TGDDDYILEF FLPPNVVEFK DQQKVLGSLL 180 TSMKQHFRSL KVACGEEIGE DGRMVEIIKA CEEGDALDSG VQSIRLSESL ISNGGPVGCV 240 DALVRPNALN VNCGKSENVE ITKKSERKRG KAEKSISLEV LQQHFAGSLK DAAKNLGVCP 300 TTMKRICRQH GISRWPSRKI NKVNRSLTKL KRVIESVQGG EGTFTIPSLA TTPLPIGVDS 360 TSWPTAPNGS PGSKPSPKND QGQTHQTSGS REASTGSPTS HRSCQESQLF EVKAPNLEGL 420 IAPQTEEPFR GMLIEDAGSS HDLTNLCQPT EVLEKVQVVS PKVQPFTART EMKTITIKAT 480 YREDIIRFRV GANSGIVTLK EEVGKRLKLD VGTFDIKYLD DDHEWVLVVC DADLQECVEL 540 SMSSGCNIIR LLVHDLSTNH GSSCESSG

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

XVFPLTQICN ESRQQALAEI LEILAVVCET HNFPLAQTWV PCRHRSVLAY GGGFKKSCSS  60
FDGSCMGQVC MSTTDVAFYV VDAHMWGFRE ACAEHHLQKG QGVAGRAFAT RSSCFCENIT  120
HFGKTEYPLV HYARMFGLVG SFAICLRSSH TGDDDYILEF FLPPNVVEFK DQQKVLGSLL  180
TSMKQHFRSL KVACGEEIGE DGRMVEIIKA CEEGDALDSG VQSIRLSESL ISNGGPVGCV  240
DALVRPNALN VNCGKSENVE ITKKSERKRG KAEKSISLEV LQQHFAGSLK DAAKNLGVCP  300
TTMKRICRQH GISRWPSRKI NKVNRSLTKL KRVIESVQGG EGTFTIPSLA TTPLPIGVDS  360
TSWPTAPNGS PGSKPSPKND QGQTHQTSGS REASTGSPTS HRSCQESQLF EVKAPNLEGL  420
IAPQTEEPFR GMLIEDAGSS HDLTNLCQPT EVLEKVQVVS PKVQPFTART EMKTITIKAT  480
YREDIIRFRV GANSGIVTLK EEVGKRLKLD VGTFDIKYLD DDHEWVLVVC DADLQECVEL  540
SMSSGCNIIR LLVHDLSTNH GSSCESSG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733065.1	0.0	LOW QUALITY PROTEIN: protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2J6KH78	0.0	A0A2J6KH78_LACSA; Uncharacterized protein
STRING	XP_006476342.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]