PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa003459 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | AP2 | ||||||||||||
Protein Properties | Length: 446aa MW: 49338.4 Da PI: 6.1565 | ||||||||||||
Description | AP2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.1e-17 | 84 | 143 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g Lsa003459 84 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 143 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.9E-17 | 84 | 152 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-13 | 84 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 85 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-25 | 85 | 157 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-15 | 85 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-5 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-5 | 133 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MATASSSDPV MKSEGSASGG ETSEAASTIG MAAAAAALVG KGNNYQQQLM VKYRGIKKSK 60 KDRGCTAKER ISKMPPCAAG KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY 120 LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNLSREDY LASLRRKGSG 180 FSRGTSKCRG ISRWDSPLGR ISGADYNNCM HHGDDATTES EYVGGFCMDR KIDLTPYIKW 240 WGPNKSQQHE KSSDETNHAT GSSEDIGSEL KPPEWATQPT QPYQLPRLGV SHESKQHKKS 300 SVSAMSILSR SAAYKSLQEK ALKKEEENDE NENKNNINKI DYGKAAVEKK SSHDNDNDND 360 NDNDDDGTTS EFGLGMEGEE GMAALHPALA PFLTNYNAID PLGDPVLWSS LVPPLQTRSS 420 QPIEHATKTE TSSDYSFFQE EDLLPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023731666.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 1e-137 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A2J6KKJ6 | 0.0 | A0A2J6KKJ6_LACSA; Uncharacterized protein | ||||
STRING | Gorai.003G091500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-122 | AP2 family protein |