PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa003311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRAS | ||||||||
Protein Properties | Length: 462aa MW: 52130.9 Da PI: 5.0051 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 305.1 | 1.6e-93 | 85 | 461 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lL +cA+a+s++d +++++lL+ l+el+sp+gd q+la yf++AL + ++s++++yk+l + +++++ +++ + f+evsP+ +f+h++ N aI Lsa003311 85 RLLRQCAQAISEKDSAKINHLLWMLNELSSPYGDCDQKLAYYFLQALFCKATESGQRCYKTLVSVADKSHCFDSARKLILKFQEVSPWTTFGHVASNGAI 184 7899**********************************************************9999985554444445455******************* PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeLrvkpgE 200 lea++ge+++HiiD++ + ++QWp+Ll+aLa+R++++psl++T+v+ +s + ++e+ +r++kfA+ +gvpfe++v+ + l dl+ eeL vk++E Lsa003311 185 LEAFDGETKLHIIDISNTLCTQWPTLLEALATRSDETPSLKLTVVVT-ASLVSSVMKEITQRMEKFARLMGVPFEIKVINGSniPLGDLTKEELGVKEDE 283 ***********************************************.5568999***********************955535899************* PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 a+aVn++ +l+r+ +e+ r +v++l+ sl+P+vv++ve+ead ++++F++ f ++l+yy+ f++le ++ ++s+er ++Ere +r+i v+ Lsa003311 284 AVAVNCIGALKRVE-----VEE-RGDVIRLFSSLKPRVVTIVEEEADFtsSRSDFMKCFEDCLRYYTLYFEMLEDSFTPTSNERLMLERE-CSRSIIRVL 376 ************97.....444.889*******************999545669************************************.89******* PP GRAS 299 acegaerr.....erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374 +c ++ + er+e+ ++W erl+e+ F+ v +s+++++++k+llr++ g+++ ++ + ++l Wkd+++v++SaW+ Lsa003311 377 SCDDKQNIgsgdcERREKGNQWCERLKEV-FSIVGFSDDVVDDVKALLRRYR-TGWSLVNDqtnpntDSGIYLAWKDESVVWASAWK 461 **987743333339*************98.**********************.7788775555666588889**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.413 | 57 | 436 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.7E-91 | 85 | 461 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
XIILNSHQTF EALVCLGDGK VVAMKSVDTL QHIQLIIHTQ LFSNGENTHL SLTNHQTTSK 60 EQSIHTYTDS GGGETCPDED KWASRLLRQC AQAISEKDSA KINHLLWMLN ELSSPYGDCD 120 QKLAYYFLQA LFCKATESGQ RCYKTLVSVA DKSHCFDSAR KLILKFQEVS PWTTFGHVAS 180 NGAILEAFDG ETKLHIIDIS NTLCTQWPTL LEALATRSDE TPSLKLTVVV TASLVSSVMK 240 EITQRMEKFA RLMGVPFEIK VINGSNIPLG DLTKEELGVK EDEAVAVNCI GALKRVEVEE 300 RGDVIRLFSS LKPRVVTIVE EEADFTSSRS DFMKCFEDCL RYYTLYFEML EDSFTPTSNE 360 RLMLERECSR SIIRVLSCDD KQNIGSGDCE RREKGNQWCE RLKEVFSIVG FSDDVVDDVK 420 ALLRRYRTGW SLVNDQTNPN TDSGIYLAWK DESVVWASAW KP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-137 | 81 | 462 | 85 | 474 | Protein SHORT-ROOT |
5b3h_B | 1e-138 | 81 | 462 | 31 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-138 | 81 | 462 | 31 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023750031.1 | 0.0 | protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 1e-138 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A2J6M8P6 | 0.0 | A0A2J6M8P6_LACSA; Uncharacterized protein | ||||
STRING | EOY04802 | 0.0 | (Theobroma cacao) |