PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003298
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 296aa    MW: 33165.4 Da    PI: 6.3424
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685872PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-32402PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16216252135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg  +  Tpl+Rrgpdg++tLCnaCGl+++ kg+
  Lsa003298 216 CRHCGINEksTPLMRRGPDGPRTLCNACGLMWANKGT 252
                ****998889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.15172107IPR010399Tify domain
SMARTSM009795.3E-1372107IPR010399Tify domain
PfamPF062003.9E-1376106IPR010399Tify domain
PROSITE profilePS5101713.334141183IPR010402CCT domain
PfamPF062033.2E-16141183IPR010402CCT domain
PROSITE profilePS501149.354210274IPR000679Zinc finger, GATA-type
SMARTSM004015.2E-13210263IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-12211259No hitNo description
Gene3DG3DSA:3.30.50.102.6E-15214257IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.69E-16215258No hitNo description
PROSITE patternPS003440216243IPR000679Zinc finger, GATA-type
PfamPF003202.6E-14216252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDELHENESA MQMTDSNPTY HPHTHYIQEQ EHEVIHDLSN GNMIEHEDQD DIGSDPGNLS  60
SDNHNAMMAR GSIEDTNQLT LSFQGQVYVF DSVSPEKVQA VLLLLGGRET SSSMPYMSLT  120
HYQQSNRDLG STPQRLNVPQ RLASLMRFRE KRKERNFEKK IRYTVRKEVA LRMQRNKGQF  180
TSSKGVHEDS AATSWDSNQG GWHSDGSGSQ HQETACRHCG INEKSTPLMR RGPDGPRTLC  240
NACGLMWANK GTLRDLSKAV AATPVGKSPS LNQRHEDENG NMDSEQTVVT GNSHDS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758961.10.0GATA transcription factor 24
SwissprotQ8GXL71e-100GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2J6LP700.0A0A2J6LP70_LACSA; Uncharacterized protein
STRINGMigut.I01184.1.p1e-112(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-92ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]