PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa003256 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | Nin-like | ||||||||
Protein Properties | Length: 330aa MW: 36962.2 Da PI: 7.5677 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.6 | 2.8e-29 | 47 | 97 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Lsa003256 47 EKSITLEMLRQHFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 97 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.881 | 33 | 117 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.9E-26 | 49 | 97 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.64E-23 | 229 | 316 | No hit | No description |
PROSITE profile | PS51745 | 23.164 | 233 | 314 | IPR000270 | PB1 domain |
SMART | SM00666 | 7.2E-24 | 233 | 316 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.0E-22 | 234 | 313 | No hit | No description |
CDD | cd06407 | 1.54E-43 | 235 | 315 | No hit | No description |
Pfam | PF00564 | 1.8E-17 | 235 | 314 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
XEEAVNEGLL VVSDIEHVQK IQETTEPGPD PGPGSGTEKR RAGAKMEKSI TLEMLRQHFA 60 GSLKDAAKNI GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS LRKIQLVMDL VHGGSGSFQI 120 ESFYSNFPKL ASQDPSTTTQ LPFAATKTET FDSKGGNTVI SCSQSSSSSH SLSGGTHQAP 180 PVKEDTGDQE QDQDRYQDQD QEQERKLFLG SLNDPPKHQN RPPKPYIKRE GGLWRVKVTF 240 GEEKIRFRLQ KDWGYNDLLQ EIAKRFSLND IGGYQLRYLD DDSEWVLLTC DADVEECIDV 300 YRSFKSGTIR LALREPQIRV GSSLGSNTPL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023730704.1 | 0.0 | protein NLP5-like | ||||
Refseq | XP_023730705.1 | 0.0 | protein NLP5-like | ||||
TrEMBL | A0A2J6KMI4 | 0.0 | A0A2J6KMI4_LACSA; Uncharacterized protein | ||||
STRING | XP_010692542.1 | 7e-84 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 5e-70 | Nin-like family protein |