PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003216
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ARF
Protein Properties Length: 583aa    MW: 65584.7 Da    PI: 7.6673
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-7813PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.16.1e-22158258199
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f k+ltpsdv k+g   l kk++++      +g+ + s++l  +d++g+ W++ +i r+ ++r++lt+GW +Fv+a++L +gD+++F    r + +l+v+
  Lsa003216 158 FRKKLTPSDVIKQGGCNLHKKHVDQTfppldMGQDAPSQELFAKDLHGKIWNFHHICRGVPKRHILTTGWGKFVSAKRLVVGDTCIFL---RGQNRLYVG 254
                89*********************999*****66667778*************************************************...677889*** PP

                EE-S CS
         B3  96 vfrk 99 
                v+r+
  Lsa003216 255 VRRA 258
                *996 PP
2Auxin_resp72.31.4e-24281367183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmaf....etedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a +a++t++ F+v+Y+Pr s+s F+v +++++++lkv++s+ +R+ m +    e+ + + +++sG+++g +d+dp+rWp+S+W +Lk
   Lsa003216 281 ALEAINTRTEFTVYYHPRISPSGFIVAYNDFMESLKVNFSPETRVEMVLdeggEEPELNLKKFSGIIIGKEDVDPSRWPGSEWHCLK 367
                 56899******************************************9942223346677888**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-31152260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-24157250IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-18157257No hitNo description
PfamPF023621.4E-18158258IPR003340B3 DNA binding domain
SMARTSM010191.7E-13158259IPR003340B3 DNA binding domain
PROSITE profilePS5086310.362158259IPR003340B3 DNA binding domain
PfamPF065074.7E-22281367IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MRSQLECQWL KVSWTCSSER FPHNLLFLLC NINNNNFFSW AKEIMTPAKA NDQVDLHTQL  60
WHECAGLTVK VPRVGDKVFY FPQGHLQQVE VYMKQEGMSD IPSYGLPSKI LCKVVCVQLK  120
AEVDTDEVFA QITLIPDCEE PKGSTFRSVP QKIPATSFRK KLTPSDVIKQ GGCNLHKKHV  180
DQTFPPLDMG QDAPSQELFA KDLHGKIWNF HHICRGVPKR HILTTGWGKF VSAKRLVVGD  240
TCIFLRGQNR LYVGVRRAVR LNKLSTDLSC VNMQHGILLT ALEAINTRTE FTVYYHPRIS  300
PSGFIVAYND FMESLKVNFS PETRVEMVLD EGGEEPELNL KKFSGIIIGK EDVDPSRWPG  360
SEWHCLKVWW HGTASGDVPP KRVSPWSIQS VVCDAQPQKR SMIGYNNNNE LGVQGEGIRM  420
REVSIPEVNK IPREDDERSK EMQVFGVDIG GHTHTHTISN THPPDSSNAG NQQSSPSYIK  480
VLKHGSFVGR CVEVSRFSGY GGLMWELDRM FGFQGGLVSG TSGWIVTYDD DNNNNNNAAA  540
DGDANKKLLG DVSWSEFRGV VRKMCICPKE KELEAATWNK ISG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A4e-955939622360Auxin response factor 1
4ldw_A4e-955939622360Auxin response factor 1
4ldw_B4e-955939622360Auxin response factor 1
4ldx_A5e-955939622360Auxin response factor 1
4ldx_B5e-955939622360Auxin response factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762394.10.0auxin response factor 2A-like
RefseqXP_023762395.10.0auxin response factor 2A-like
RefseqXP_023762397.10.0auxin response factor 2A-like
TrEMBLA0A2J6LGU90.0A0A2J6LGU9_LACSA; Auxin response factor
STRINGXP_008791039.11e-110(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-107auxin response factor 2