PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003012
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 624aa    MW: 70604 Da    PI: 4.7614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692620PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.15.8e-5661331128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v s +++
  Lsa003012   6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRNVNS-QSR 103
                79****************************.99***************6434555777**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                +vg+kktLv+y+grap+g ++dWvmheyrl
  Lsa003012 104 AVGMKKTLVYYRGRAPHGARSDWVMHEYRL 133
                ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-634158IPR003441NAC domain
PROSITE profilePS5100561.6016158IPR003441NAC domain
PfamPF023651.6E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRNVNS QSRAVGMKKT LVYYRGRAPH  120
GARSDWVMHE YRLDERECET ESGLKLQDAY SLCRVFKKSL NAPKTTIGVH YAVAVSDHSS  180
SMDLYSEGGR GGEDMETCNY PTPMASSSSN INHGSPHNVS ESSDGRWMQY LSEEAFAFPN  240
PSFTNYGNVS FPPTKVDIAL ECARLQQRLS MPPLQVQDLP HQGATSYVDL MNMQQTTSSS  300
MRDVTTTNGP QQDILHEILS LAQVSQDHIN QNTWGGGYSS HQEDDFSFLD DNDNNIQVQD  360
VGSFRFMGDD QNARSIEVTG VDEQQLRSDR MVENLRWVGM SNKDLEMTYN WDDYKNVPVE  420
NMPSFQKEEH EVQGESSHQN NFDNTEDHFS LGITTEGHDN SNENLLDEAD LEDFTTTPSF  480
EIYEKTKVST HGLIVSTRQV SETFFHQIVP SQIVKVHLNP GMIHDQTVSK SDSQTTLSKK  540
VLYDKFKMIT SSKPFEVINK KPKTPLVTLV SLLLICCFYL EESTEDGGDM KLKEDDDGGS  600
AGNSIRMEDG EEEKNEGWGI SSLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-56215811168Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767454.10.0NAC domain-containing protein 86 isoform X1
TrEMBLA0A2J6L5X20.0A0A2J6L5X2_LACSA; Uncharacterized protein
STRINGVIT_04s0079g00280.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-157NAC domain containing protein 28