PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa002937

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 263aa MW: 29507.8 Da PI: 8.7218

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678656	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.2	2.7e-36	47	104	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ +kcprCdstntkfCyynny+ +qPr+fCkaC+r+WtkGG+lrnvPvGggr+++++ Lsa002937 47 SDLVKCPRCDSTNTKFCYYNNYNKTQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKRS 104 5679**********************************************99766554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-24	45	103	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	49	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.391	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MGLSSKQVSG DHIELNWTQN MLTSDTIQSS SNPRSTTLKR SLPTQQSDLV KCPRCDSTNT 60 KFCYYNNYNK TQPRHFCKAC KRHWTKGGTL RNVPVGGGRK NKRSKRPNTT TTAATTTVDH 120 SLGFNGHKYM FPDDKGLFFK PNDSEFDQVS WDFNGGFTSS TTSMQPTPRQ SLGFSMLSNM 180 TSMDTTSIPI IPTSFSPLLS GFKDDSTLTT ARTMVQNSAT VSQPWMQAPT TSNFLESNYW 240 NWNDIDSIVD ESDLNKPFED PQV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023755518.1	0.0	dof zinc finger protein 4-like
TrEMBL	A0A2J6LWH6	0.0	A0A2J6LWH6_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-31	Dof family protein